def test_loading_can_find_paired_file(self):
# shouldn't raise since it can find B-file
a_file = osp.join(TEST_DIR, 'dlogs', 'Adlog1.dlg')
Dynalog(a_file)
# ditto for A-file
b_file = osp.join(TEST_DIR, 'dlogs', 'Bdlog1.dlg')
Dynalog(b_file)
def test_dynalog(self):
# test making an anonymized copy
dlog_file = osp.join(ANONYMOUS_DEST_FOLDER, 'A1234_patientid.dlg')
dlog = Dynalog(dlog_file)
dlog.anonymize()
# test doing inplace anonymization
files = dlog.anonymize(inplace=True, suffix='inplace')
for file in files:
self.assertTrue('inplace' in file)
def test_loading_can_find_paired_file(self):
# get all the test files
get_folder_from_cloud_test_repo(['mlc_logs', 'dlogs'])
# shouldn't raise since it can find B-file
a_file = get_file_from_cloud_test_repo(
['mlc_logs', 'dlogs', 'Adlog1.dlg'])
Dynalog(a_file)
# ditto for A-file
b_file = get_file_from_cloud_test_repo(
['mlc_logs', 'dlogs', 'Bdlog1.dlg'])
Dynalog(b_file)
def test_bad_name(self):
"""Test that a log with a bad name (no underscore) fails gracefully."""
dlog_file = osp.join(ANONYMOUS_DEST_FOLDER, 'A1234patientid.dlg')
dlog = Dynalog(dlog_file)
with self.assertRaises(NameError):
dlog.anonymize()
def setUpClass(cls):
cls.log = Dynalog.from_demo()
cls.log.fluence.gamma.calc_map()
def setUpClass(cls):
cls.tlog = TrajectoryLog.from_demo()
cls.dlog = Dynalog.from_demo()
def test_static_imrt_log(self):
get_folder_from_cloud_test_repo(['mlc_logs', 'dlogs'])
dlog = Dynalog(
get_file_from_cloud_test_repo(
['mlc_logs', 'dlogs', 'A_static_imrt.dlg']))
self.assertTrue(dlog.treatment_type, TreatmentType.STATIC_IMRT)
def test_vmat_log(self):
get_folder_from_cloud_test_repo(['mlc_logs', 'dlogs'])
dlog = Dynalog(
get_file_from_cloud_test_repo(['mlc_logs', 'dlogs', 'A_vmat.dlg']))
self.assertTrue(dlog.treatment_type, TreatmentType.VMAT)
def test_static_imrt_log(self):
dlog = Dynalog(osp.join(TEST_DIR, 'dlogs', 'A_static_imrt.dlg'))
self.assertTrue(dlog.treatment_type, STATIC_IMRT)
def test_vmat_log(self):
dlog = Dynalog(osp.join(TEST_DIR, 'dlogs', 'A_vmat.dlg'))
self.assertTrue(dlog.treatment_type, VMAT)