def plot(use_pylustrator):
# use the pylustrator only if it is asked for
if use_pylustrator:
# import pylustrator
import pylustrator
# activate pylustrator
pylustrator.start()
fig = plt.figure(figsize=(8, 6))
rmsd_ax = fig.add_subplot(211, facecolor='#FFFFCC')
# fixme - load from the file saved
data = np.loadtxt(os.path.splitext(__file__)[0] + '.dat').T
time = data[1] / 1000 # to ns
rmsd = data[2]
rmsd_ax.plot(time, rmsd, 'o--', label="all")
rmsd_ax.set_xlabel("time (ps)")
rmsd_ax.set_ylabel(r"RMSD ($\AA$)")
rmsd_ax.legend(loc="best").set_draggable(True)
rmsd_hist_ax = fig.add_subplot(212)
rmsd_hist_ax.hist(rmsd)
plt.show()
return time, rmsd, rmsd_ax, rmsd_hist_ax, fig
from matplotlib.backends.backend_pdf import PdfPages
from scripts.helper_functions import getInputFile, getConfig, getData
from scripts.helper_functions import refetchTimestamps, getVelocity, filterCells, correctCenter, getStressStrain, fitStiffness
from scripts.helper_functions import initPlotSettings, plotVelocityProfile, plotStressStrain, plotMessurementStatus
from scripts.helper_functions import storeEvaluationResults, load_all_data, get_bootstrap_fit
import numpy as np
import tqdm
import pandas as pd
import matplotlib.pyplot as plt
from scipy.optimize import curve_fit
from scipy.stats import gaussian_kde
import glob
import pylustrator
pylustrator.start()
files = [
[
r"\\131.188.117.96\biophysDS\emirzahossein\microfluidic cell rhemeter data\microscope_1\august_2020\2020_08_21_alginate2%_NIH_xposition_1\inlet\inlet_1\*_result.txt",
],
[
r"\\131.188.117.96\biophysDS\emirzahossein\microfluidic cell rhemeter data\microscope_1\august_2020\2020_08_21_alginate2%_NIH_xposition_1\inlet\inlet_2\*_result.txt",
],
[
r"\\131.188.117.96\biophysDS\emirzahossein\microfluidic cell rhemeter data\microscope_1\august_2020\2020_08_21_alginate2%_NIH_xposition_1\inlet\inlet_3\*_result.txt",
],
]
pos = "inlet"
axes = []
