def add_relation(self, rel, concept):
if isinstance(concept, pymedtermino.Concept):
if rel in self.relations:
getattr(self, rel).add(concept)
else:
self.relations.add(rel)
setattr(self, rel, pymedtermino.Concepts([concept]))
else:
if rel in self.relations:
getattr(self, rel).update(concept)
else:
self.relations.add(rel)
setattr(self, rel, pymedtermino.Concepts(concept))
def map_concepts(self, concepts):
r = pymedtermino.Concepts()
for concept in concepts:
db_cursor.execute(self.request, (concept.code, ))
for (code, ) in db_cursor.fetchall():
c = self.terminology2.get(code)
if c: r.add(c)
return r
def map_concepts(self, concepts):
r = pymedtermino.Concepts()
for concept in concepts:
code = concept.code.replace(".", "")
db_cursor.execute(
"SELECT cimcdf_cdf_numero_fk_pk, cimcdf_cdf_code_fk_pk FROM cimcdf_cim10_codif WHERE cimcdf_cim_code_fk_pk = %s",
(code, ))
for (numero, code) in db_cursor.fetchall():
c = self.terminology2.get("%s_%s" % (numero, code))
if c: r.add(c)
return r
def associated_clinical_findings(self):
"""Return the clinical finding concepts associated to this concept (which is expected to be a anatomical structure, a morphology, etc)."""
r = pymedtermino.Concepts()
for i in set(self.self_and_descendants()) | set(
self.descendant_parts()):
for relation in MAIN_CLINICAL_FINDING_RELATIONS:
relation = "INVERSE_%s" % relation
if relation in i.relations:
for j in getattr(i, relation):
if j.is_a(SNOMEDCT[404684003]): r.add(j)
return r
def map_concepts(self, concepts):
r = pymedtermino.Concepts()
for concept in concepts:
db_cursor.execute(
"SELECT cimcdf_cim_code_fk_pk FROM WHERE (cimcdf_cdf_numero_fk_pk = %s) AND (cimcdf_cdf_code_fk_pk = %s)",
(concept.cdf_numero, concept.cdf_code))
for (code, ) in db_cursor.fetchall():
if (not "-" in code) and (len(code) > 3):
code = "%s.%s" % (code[:3], code[3:])
c = self.terminology2.get(code)
if c: r.add(c)
return r
