def do_pick(self, bondFlag):
if self.mode == 0:
self.cmd.select(active_sele, "bymol pk1")
editor.attach_fragment("pk1", self.fragment, self.position, self.geometry, _self=self.cmd)
elif self.mode == 1:
self.cmd.select(active_sele, "bymol pk1")
editor.combine_fragment("pk1", self.fragment, self.position,
self.geometry, _self=self.cmd)
self.mode = 0
self.cmd.refresh_wizard()
self.cmd.unpick()
if not self.getRepeating():
self.actionWizardDone()
def do_pick(self, bondFlag):
if self.mode == 0:
self.cmd.select(active_sele, "bymol pk1")
editor.attach_fragment("pk1", self.fragment, self.position, self.geometry, _self=self.cmd)
elif self.mode == 1:
self.cmd.select(active_sele, "bymol pk1")
editor.combine_fragment("pk1", self.fragment, self.position,
self.geometry, _self=self.cmd)
self.mode = 0
self.cmd.refresh_wizard()
self.cmd.unpick()
if not self.getRepeating():
self.actionWizardDone()
def do_pick(self, bondFlag):
# since this function can change any position of atoms in a related
# molecule, bymol is used
if self.mode == 0:
self.cmd.select(active_sele, "bymol pk1")
try:
with undocontext(self.cmd, "bymol ?pk1"):
editor.attach_amino_acid("pk1", self.aminoAcid, _self=self.cmd)
except QuietException:
fin = -1
elif self.mode == 1:
self.cmd.select(active_sele, "bymol pk1")
editor.combine_fragment("pk1", self.aminoAcid, 0, 1, _self=self.cmd)
self.mode = 0
self.cmd.refresh_wizard()
self.cmd.unpick()
if not self.getRepeating():
self.actionWizardDone()
def do_pick(self, bondFlag):
# since this function can change any position of atoms in a related
# molecule, bymol is used
if self.mode == 0:
self.cmd.select(active_sele, "bymol pk1")
try:
with undocontext(self.cmd, "bymol ?pk1"):
self.attach_monomer(self.aminoAcid)
except QuietException:
fin = -1
elif self.mode == 1:
self.cmd.select(active_sele, "bymol pk1")
editor.combine_fragment("pk1", self.aminoAcid, 0, 1, _self=self.cmd)
self.mode = 0
self.cmd.refresh_wizard()
self.cmd.unpick()
if not self.getRepeating():
self.actionWizardDone()