def test_init(self):
is1 = ImageSeries(name='is1',
data=np.ones((2, 2, 2)),
unit='unit',
external_file=['external_file'],
starting_frame=[1, 2, 3],
format='tiff',
timestamps=[1., 2.])
is2 = ImageSeries(name='is2',
data=np.ones((2, 2, 2)),
unit='unit',
external_file=['external_file'],
starting_frame=[1, 2, 3],
format='tiff',
timestamps=[1., 2.])
tstamps = np.arange(1.0, 100.0, 0.1, dtype=np.float)
ts = TimeSeries("test_ts",
list(range(len(tstamps))),
'unit',
timestamps=tstamps)
cis = CorrectedImageStack(is1, is2, ts)
ProcessingModule('name', 'description').add(cis)
self.assertEqual(cis.corrected, is1)
self.assertEqual(cis.original, is2)
self.assertEqual(cis.xy_translation, ts)
class TestProcessingModule(unittest.TestCase):
def setUp(self):
self.pm = ProcessingModule('test_procmod', 'PyNWB unit test, test_init', 'a fake processing module')
def test_init(self):
self.assertEqual(self.pm.name, 'test_procmod')
self.assertEqual(self.pm.source, 'PyNWB unit test, test_init')
self.assertEqual(self.pm.description, 'a fake processing module')
def test_add_container(self):
ts = TimeSeries('test_ts', 'unit test test_add_container', [0, 1, 2, 3, 4, 5],
'grams', timestamps=[0.0, 0.1, 0.2, 0.3, 0.4, 0.5])
self.pm.add_container(ts)
self.assertIn(ts.name, self.pm.containers)
self.assertIs(ts, self.pm.containers[ts.name])
def test_get_container(self):
ts = TimeSeries('test_ts', 'unit test test_get_container', [0, 1, 2, 3, 4, 5],
'grams', timestamps=[0.0, 0.1, 0.2, 0.3, 0.4, 0.5])
self.pm.add_container(ts)
tmp = self.pm.get_container('test_ts')
self.assertIs(tmp, ts)
def test_getitem(self):
ts = TimeSeries('test_ts', 'unit test test_getitem', [0, 1, 2, 3, 4, 5],
'grams', timestamps=[0.0, 0.1, 0.2, 0.3, 0.4, 0.5])
self.pm.add_container(ts)
tmp = self.pm['test_ts']
self.assertIs(tmp, ts)
class TestProcessingModule(TestCase):
def setUp(self):
self.pm = ProcessingModule('test_procmod', 'a fake processing module')
def test_init(self):
self.assertEqual(self.pm.name, 'test_procmod')
self.assertEqual(self.pm.description, 'a fake processing module')
def test_add_data_interface(self):
ts = TimeSeries('test_ts', [0, 1, 2, 3, 4, 5],
'grams', timestamps=[0.0, 0.1, 0.2, 0.3, 0.4, 0.5])
self.pm.add(ts)
self.assertIn(ts.name, self.pm.containers)
self.assertIs(ts, self.pm.containers[ts.name])
def test_deprecated_add_data_interface(self):
ts = TimeSeries('test_ts', [0, 1, 2, 3, 4, 5],
'grams', timestamps=[0.0, 0.1, 0.2, 0.3, 0.4, 0.5])
with self.assertWarnsWith(PendingDeprecationWarning, 'add_data_interface will be replaced by add'):
self.pm.add_data_interface(ts)
self.assertIn(ts.name, self.pm.containers)
self.assertIs(ts, self.pm.containers[ts.name])
def test_deprecated_add_container(self):
ts = TimeSeries('test_ts', [0, 1, 2, 3, 4, 5],
'grams', timestamps=[0.0, 0.1, 0.2, 0.3, 0.4, 0.5])
with self.assertWarnsWith(PendingDeprecationWarning, 'add_container will be replaced by add'):
self.pm.add_container(ts)
self.assertIn(ts.name, self.pm.containers)
self.assertIs(ts, self.pm.containers[ts.name])
def test_get_data_interface(self):
ts = TimeSeries('test_ts', [0, 1, 2, 3, 4, 5],
'grams', timestamps=[0.0, 0.1, 0.2, 0.3, 0.4, 0.5])
self.pm.add(ts)
tmp = self.pm.get('test_ts')
self.assertIs(tmp, ts)
self.assertIs(self.pm['test_ts'], self.pm.get('test_ts'))
def test_deprecated_get_data_interface(self):
ts = TimeSeries('test_ts', [0, 1, 2, 3, 4, 5],
'grams', timestamps=[0.0, 0.1, 0.2, 0.3, 0.4, 0.5])
self.pm.add(ts)
with self.assertWarnsWith(PendingDeprecationWarning, 'get_data_interface will be replaced by get'):
tmp = self.pm.get_data_interface('test_ts')
self.assertIs(tmp, ts)
def test_deprecated_get_container(self):
ts = TimeSeries('test_ts', [0, 1, 2, 3, 4, 5],
'grams', timestamps=[0.0, 0.1, 0.2, 0.3, 0.4, 0.5])
self.pm.add(ts)
with self.assertWarnsWith(PendingDeprecationWarning, 'get_container will be replaced by get'):
tmp = self.pm.get_container('test_ts')
self.assertIs(tmp, ts)
def test_getitem(self):
ts = TimeSeries('test_ts', [0, 1, 2, 3, 4, 5],
'grams', timestamps=[0.0, 0.1, 0.2, 0.3, 0.4, 0.5])
self.pm.add(ts)
tmp = self.pm['test_ts']
self.assertIs(tmp, ts)
def setUp(self):
self.pm = ProcessingModule('test_procmod', 'a fake processing module')
def setUp(self):
self.pm = ProcessingModule('test_procmod', 'PyNWB unit test, test_init', 'a fake processing module')