def bootstrap_pyon(logging_config_override=None, pyon_cfg=None):
"""
This function initializes the core elements of the Pyon framework in a controlled way.
It does not initialize the ION container or the ION system.
@param logging_config_override A dict to initialize the Python logging subsystem (None loads default files)
@param pyon_cfg A DotDict with the fully loaded pyon configuration to merge into CFG (None loads default files)
"""
log.info("pyon.bootstrap (bootstrap_pyon) executing...")
# Make sure Pyon is only initialized only once
global pyon_initialized
if pyon_initialized:
log.warn("WARNING -- bootstrap_pyon() called again!")
return
# ENVIRONMENT. Check we are called in an expected environment (files, directories, etc)
assert_environment()
# LOGGING. Initialize logging from config
if not logutil.is_logging_configured():
logutil.configure_logging(
logutil.DEFAULT_LOGGING_PATHS,
logging_config_override=logging_config_override)
# YAML patch: OrderedDicts instead of dicts
from pyon.util.yaml_ordered_dict import apply_yaml_patch
apply_yaml_patch()
# CONFIG. Initialize pyon global configuration from local files
set_config(pyon_cfg)
log.debug("CFG set to %s", CFG)
# OBJECTS. Object and message definitions.
from pyon.core.registry import IonObjectRegistry
global _obj_registry
_obj_registry = IonObjectRegistry()
# SERVICES. Service definitions
# TODO: change the following to read service definitions from directory and import selectively
from pyon.ion.service import IonServiceRegistry
import interface.services
global _service_registry
_service_registry = IonServiceRegistry()
_service_registry.load_service_mods(interface.services)
_service_registry.build_service_map()
# RESOURCES. Load and initialize definitions
from pyon.ion import resource
resource.load_definitions()
# Fix a weird bug on Ubuntu that resets time.sleep to un-monkey patched version on import threading
from gevent import monkey
monkey.patch_time()
# Set initialized flag
pyon_initialized = True
log.debug("Pyon initialized OK")
def bootstrap_pyon(logging_config_override=None, pyon_cfg=None):
"""
This function initializes the core elements of the Pyon framework in a controlled way.
It does not initialize the ION container or the ION system.
@param logging_config_override A dict to initialize the Python logging subsystem (None loads default files)
@param pyon_cfg A DotDict with the fully loaded pyon configuration to set as CFG (None loads default files)
"""
print "pyon: pyon.bootstrap (bootstrap_pyon) executing..."
# Make sure Pyon is only initialized only once
global pyon_initialized
if pyon_initialized:
print "pyon: WARNING -- bootstrap_pyon() called again!"
return
# ENVIRONMENT. Check we are called in an expected environment (files, directories, etc)
assert_environment()
# LOGGING. Initialize logging from config
load_logging_config(logging_config_override=logging_config_override)
# YAML patch: OrderedDicts instead of dicts
from pyon.util.yaml_ordered_dict import apply_yaml_patch
apply_yaml_patch()
# CONFIG. Initialize pyon global configuration from local files
set_config(pyon_cfg)
# OBJECTS. Object and message definitions.
from pyon.core.registry import IonObjectRegistry
global _obj_registry
_obj_registry = IonObjectRegistry()
# SERVICES. Service definitions
from pyon.service.service import IonServiceRegistry
global _service_registry
_service_registry = IonServiceRegistry()
_service_registry.load_service_mods('interface/services')
_service_registry.build_service_map()
# INTERCEPTORS.
# TODO: Is
from pyon.net.endpoint import instantiate_interceptors
instantiate_interceptors(CFG.interceptor)
# RESOURCES. Load and initialize definitions
from pyon.ion import resource
resource.load_definitions()
# Set initialized flag
pyon_initialized = True
def setUp(self):
# TODO: Change the hacky hardcoded path once we have path management
self.registry = IonObjectRegistry()
def setUp(self):
self.patch_cfg('pyon.core.bootstrap.CFG', {'container': {'objects': {'validate': {'setattr': True}}}})
self.registry = IonObjectRegistry()
@file ion/services/dm/utility/granule/taxonomy.py
@author David Stuebe
@author Don Brittain
@author Tim Giguere
@brief https://confluence.oceanobservatories.org/display/CIDev/R2+Construction+Data+Model
'''
import yaml
from pyon.core.object import ion_serializer, IonObjectDeserializer
from pyon.core.registry import IonObjectRegistry
from interface.objects import Taxonomy
from pyon.util.log import log
# Create an IonObjectDeserializer used in the prototype loads method...
ior = IonObjectRegistry()
ion_deserializer = IonObjectDeserializer(obj_registry=ior)
class TaxyTool(object):
"""
@brief Wraps up a Taxonomy (IONObject) in a class which uses that information
Definition of the Taxonomy Ion Resource:
Taxonomy: !Extends_InformationResource
map: {}
The map is a dictionary which contains handles as keys and name sets as values.
A name set is a set of objects which can be hashed for inverse lookup and should be serializable for transport and persistence
In practice they are strings for nicknames and Taxonomy Description objects for complex definitions
