def testMetricsEffectiveFoundersBoichardB(self):
# Example taken from Boichard et al. (1997), Figure 2.
# Used to test calculation of effective founder number.
options = {}
options['messages'] = 'quiet'
options['pedfile'] = 'tests/boichard/boichard2b.ped'
options['pedname'] = 'Boichard Pedigree (Family 2 only)'
options['pedformat'] = 'asdg'
options['pedigree_is_renumbered'] = '1'
options['filetag'] = 'example2b'
example2b = pyp_newclasses.NewPedigree(options)
example2b.load()
fe = pyp_metrics.a_effective_founders_boichard(example2b)
self.assertEqual(round(2.0, 1), round(fe, 1))
def testMetricsEffectiveFoundersBoichardB(self):
# Example taken from Boichard et al. (1997), Figure 2.
# Used to test calculation of effective founder number.
options = {}
options['messages'] = 'quiet'
options['pedfile'] = 'tests/boichard/boichard2b.ped'
options['pedname'] = 'Boichard Pedigree (Family 2 only)'
options['pedformat'] = 'asdg'
options['pedigree_is_renumbered'] = '1'
options['filetag'] = 'example2b'
example2b = pyp_newclasses.NewPedigree(options)
example2b.load()
fe = pyp_metrics.a_effective_founders_boichard(example2b)
self.assertEqual(round(2.0,1), round(fe,1))