def test_auto_load(self): traj = Trajectory(name='Testautoload', filename=make_temp_dir('autoload.hdf5')) traj.v_auto_load = True traj.f_add_result('I.am.$.a.mean.resu', 42, comment='Test') traj.f_add_derived_parameter('ffa', 42) traj.f_store() ffa=traj.f_get('ffa') ffa.f_unlock() ffa.f_empty() self.assertTrue(ffa.f_is_empty()) traj.f_remove_child('results', recursive=True) # check auto load val = traj.res.I.am.crun.a.mean.resu self.assertTrue(val==42) val = traj.ffa self.assertTrue(val==42) with self.assertRaises(pex.DataNotInStorageError): traj.kdsfdsf
def test_auto_load(self): traj = Trajectory(name='Testautoload', filename=make_temp_dir('autoload.hdf5'), add_time=True) traj.v_auto_load = True traj.f_add_result('I.am.$.a.mean.resu', 42, comment='Test') traj.f_add_derived_parameter('ffa', 42) traj.f_store() ffa=traj.f_get('ffa') ffa.f_unlock() ffa.f_empty() self.assertTrue(ffa.f_is_empty()) traj.f_remove_child('results', recursive=True) # check auto load val = traj.res.I.am.crun.a.mean.resu self.assertTrue(val==42) val = traj.ffa self.assertTrue(val==42) with self.assertRaises(pex.DataNotInStorageError): traj.kdsfdsf
def test_migrations(self): traj = Trajectory(name='Testmigrate', filename=make_temp_dir('migrate.hdf5'), add_time=True) traj.f_add_result('I.am.a.mean.resu', 42, comment='Test') traj.f_add_derived_parameter('ffa', 42) traj.f_store() new_file = make_temp_dir('migrate2.hdf5') traj.f_migrate(filename=new_file) traj.f_store() new_traj = Trajectory() new_traj.f_migrate(new_name=traj.v_name, filename=new_file, in_store=True) new_traj.v_auto_load = True self.assertTrue(new_traj.results.I.am.a.mean.resu == 42)
def test_find_in_all_runs_with_links(self): traj = Trajectory() traj.f_add_parameter('FloatParam') traj.par.FloatParam = 4.0 self.explore_dict = {'FloatParam': [1.0, 1.1, 1.2, 1.3]} traj.f_explore(self.explore_dict) self.assertTrue(len(traj) == 4) traj.f_add_result('results.runs.run_00000000.sub.resulttest', 42) traj.f_add_result('results.runs.run_00000001.sub.resulttest', 43) traj.f_add_result('results.runs.run_00000002.sub.resulttest', 44) traj.f_add_result('results.runs.run_00000002.sub.resulttest2', 42) traj.f_add_result('results.runs.run_00000003.sub.resulttest2', 43) traj.f_add_derived_parameter( 'derived_parameters.runs.run_00000002.testing', 44) res_dict = traj.f_get_from_runs('resulttest', fast_access=True) self.assertTrue(len(res_dict) == 3) self.assertTrue(res_dict['run_00000001'] == 43) self.assertTrue('run_00000003' not in res_dict) res_dict = traj.f_get_from_runs(name='sub.resulttest2', use_indices=True) self.assertTrue(len(res_dict) == 2) self.assertTrue(res_dict[3] is traj.f_get('run_00000003.resulttest2')) self.assertTrue(1 not in res_dict) traj.res.runs.r_0.f_add_link('resulttest2', traj.r_1.f_get('resulttest')) res_dict = traj.f_get_from_runs(name='resulttest2', use_indices=True) self.assertTrue(len(res_dict) == 3) self.assertTrue(res_dict[0] is traj.f_get('run_00000001.resulttest')) self.assertTrue(1 not in res_dict) res_dict = traj.f_get_from_runs(name='resulttest2', use_indices=True, with_links=False) self.assertTrue(len(res_dict) == 2) self.assertTrue(0 not in res_dict) self.assertTrue(1 not in res_dict)
def test_find_in_all_runs_with_links(self): traj = Trajectory() traj.f_add_parameter('FloatParam') traj.par.FloatParam=4.0 self.explore_dict = {'FloatParam':[1.0,1.1,1.2,1.3]} traj.f_explore(self.explore_dict) self.assertTrue(len(traj) == 4) traj.f_add_result('results.runs.run_00000000.sub.resulttest', 42) traj.f_add_result('results.runs.run_00000001.sub.resulttest', 43) traj.f_add_result('results.runs.run_00000002.sub.resulttest', 44) traj.f_add_result('results.runs.run_00000002.sub.resulttest2', 42) traj.f_add_result('results.runs.run_00000003.sub.resulttest2', 43) traj.f_add_derived_parameter('derived_parameters.runs.run_00000002.testing', 44) res_dict = traj.f_get_from_runs('resulttest', fast_access=True) self.assertTrue(len(res_dict)==3) self.assertTrue(res_dict['run_00000001']==43) self.assertTrue('run_00000003' not in res_dict) res_dict = traj.f_get_from_runs(name='sub.resulttest2', use_indices=True) self.assertTrue(len(res_dict)==2) self.assertTrue(res_dict[3] is traj.f_get('run_00000003.resulttest2')) self.assertTrue(1 not in res_dict) traj.res.runs.r_0.f_add_link('resulttest2', traj.r_1.f_get('resulttest')) res_dict = traj.f_get_from_runs(name='resulttest2', use_indices=True) self.assertTrue(len(res_dict)==3) self.assertTrue(res_dict[0] is traj.f_get('run_00000001.resulttest')) self.assertTrue(1 not in res_dict) res_dict = traj.f_get_from_runs(name='resulttest2', use_indices=True, with_links=False) self.assertTrue(len(res_dict)==2) self.assertTrue(0 not in res_dict) self.assertTrue(1 not in res_dict)
def test_migrations(self): traj = Trajectory(name='Testmigrate', filename=make_temp_dir('migrate.hdf5')) traj.f_add_result('I.am.a.mean.resu', 42, comment='Test') traj.f_add_derived_parameter('ffa', 42) traj.f_store() new_file = make_temp_dir('migrate2.hdf5') traj.f_migrate(filename=new_file) traj.f_store() new_traj = Trajectory() new_traj.f_migrate(new_name=traj.v_name, filename=new_file, in_store=True) new_traj.v_auto_load=True self.assertTrue(new_traj.results.I.am.a.mean.resu == 42)
def test_delete_whole_subtrees(self): filename = make_temp_dir('testdeltree.hdf5') traj = Trajectory(name='TestDelete', filename=filename, large_overview_tables=True) res = traj.f_add_result('mytest.yourtest.test', a='b', c='d') dpar = traj.f_add_derived_parameter('mmm.gr.dpdp', 666) res = traj.f_add_result('hhh.ll', a='b', c='d') res = traj.f_add_derived_parameter('hhh.gg', 555) traj.f_store() with ptcompat.open_file(filename) as fh: daroot = ptcompat.get_child(fh.root, traj.v_name) dpar_table = daroot.overview.derived_parameters_overview self.assertTrue(len(dpar_table) == 2) res_table = daroot.overview.results_overview self.assertTrue((len(res_table)) == 2) with self.assertRaises(TypeError): traj.f_remove_item(traj.yourtest) with self.assertRaises(TypeError): traj.f_delete_item(traj.yourtest) traj.f_remove_item(traj.yourtest, recursive=True) self.assertTrue('mytest' in traj) self.assertTrue('yourtest' not in traj) traj.f_load(load_data=2) self.assertTrue('yourtest.test' in traj) traj.f_delete_item(traj.yourtest, recursive=True, remove_from_trajectory=True) traj.f_delete_item(traj.mmm, recursive=True, remove_from_trajectory=True) traj.f_load(load_data=2) self.assertTrue('yourtest.test' not in traj) self.assertTrue('yourtest' not in traj) with ptcompat.open_file(filename) as fh: daroot = ptcompat.get_child(fh.root, traj.v_name) dpar_table = daroot.overview.derived_parameters_overview self.assertTrue(len(dpar_table) == 2) res_table = daroot.overview.results_overview self.assertTrue((len(res_table)) == 2) traj.f_add_parameter('ggg', 43) traj.f_add_parameter('hhh.mmm', 45) traj.f_add_parameter('jjj', 55) traj.f_add_parameter('hhh.nnn', 55555) traj.f_explore({'ggg':[1,2,3]}) traj.f_store() with ptcompat.open_file(filename) as fh: daroot = ptcompat.get_child(fh.root, traj.v_name) par_table = daroot.overview.parameters_overview self.assertTrue(len(par_table) == 4) traj.f_delete_item('par.hhh', recursive=True, remove_from_trajectory=True) traj.f_add_parameter('saddsdfdsfd', 111) traj.f_store() with ptcompat.open_file(filename) as fh: daroot = ptcompat.get_child(fh.root, traj.v_name) par_table = daroot.overview.parameters_overview self.assertTrue(len(par_table) == 5) # with self.assertRaises(TypeError): # # We cannot delete something containing an explored parameter # traj.f_delete_item('par', recursive=True) with self.assertRaises(TypeError): traj.f_delete_item('ggg')
def test_delete_whole_subtrees(self): filename = make_temp_dir('testdeltree.hdf5') traj = Trajectory(name='TestDelete', filename=filename, large_overview_tables=True, add_time=True) res = traj.f_add_result('mytest.yourtest.test', a='b', c='d') dpar = traj.f_add_derived_parameter('mmm.gr.dpdp', 666) res = traj.f_add_result('hhh.ll', a='b', c='d') res = traj.f_add_derived_parameter('hhh.gg', 555) traj.f_store() with pt.open_file(filename) as fh: daroot = fh.root._f_get_child(traj.v_name) dpar_table = daroot.overview.derived_parameters_overview self.assertTrue(len(dpar_table) == 2) res_table = daroot.overview.results_overview self.assertTrue((len(res_table)) == 2) with self.assertRaises(TypeError): traj.f_remove_item(traj.yourtest) with self.assertRaises(TypeError): traj.f_delete_item(traj.yourtest) traj.f_remove_item(traj.yourtest, recursive=True) self.assertTrue('mytest' in traj) self.assertTrue('yourtest' not in traj) traj.f_load(load_data=2) self.assertTrue('yourtest.test' in traj) traj.f_delete_item(traj.yourtest, recursive=True, remove_from_trajectory=True) traj.f_delete_item(traj.mmm, recursive=True, remove_from_trajectory=True) traj.f_load(load_data=2) self.assertTrue('yourtest.test' not in traj) self.assertTrue('yourtest' not in traj) with pt.open_file(filename) as fh: daroot = fh.root._f_get_child(traj.v_name) dpar_table = daroot.overview.derived_parameters_overview self.assertTrue(len(dpar_table) == 2) res_table = daroot.overview.results_overview self.assertTrue((len(res_table)) == 2) traj.f_add_parameter('ggg', 43) traj.f_add_parameter('hhh.mmm', 45) traj.f_add_parameter('jjj', 55) traj.f_add_parameter('hhh.nnn', 55555) traj.f_explore({'ggg':[1,2,3]}) traj.f_store() with pt.open_file(filename) as fh: daroot = fh.root._f_get_child(traj.v_name) par_table = daroot.overview.parameters_overview self.assertTrue(len(par_table) == 4) traj.f_delete_item('par.hhh', recursive=True, remove_from_trajectory=True) traj.f_add_parameter('saddsdfdsfd', 111) traj.f_store() with pt.open_file(filename) as fh: daroot = fh.root._f_get_child(traj.v_name) par_table = daroot.overview.parameters_overview self.assertTrue(len(par_table) == 5)