def setUp(self):
lg = LineGenerator(kernel=CubicSplineKernel(1))
lg.end_point.x = 1.0
lg.end_point.z = 0.0
self.pas = [lg.get_particles()]
self.pas[0].x += 0.1
self.cell_size = 0.1
self.dim = 1
def setUp(self):
lg = LineGenerator(kernel=CubicSplineKernel(1))
lg.end_point.x = 1.0
lg.end_point.z = 0.0
self.pas = [lg.get_particles()]
self.pas[0].x += 0.1
self.cell_size = 0.1
self.dim = 1
# local imports
from pysph.base.particle_array import ParticleArray
from pysph.parallel.parallel_cell import ParallelCellManager
from pysph.solver.basic_generators import LineGenerator
from pysph.base.cell import INT_INF
from pysph.base.point import *
pcm = ParallelCellManager(initialize=False, dimension=1)
parray = ParticleArray(name="parray")
if rank == 0:
lg = LineGenerator(start_point=Point(0, 0, 0), end_point=Point(1.0, 0, 0), particle_spacing=0.01)
x, y, z = lg.get_coords()
parray.add_property({"name": "x", "data": x})
parray.add_property({"name": "y", "data": y})
parray.add_property({"name": "z", "data": z})
parray.add_property({"name": "h"})
parray.align_particles()
parray.h[:] = 0.01
else:
parray.add_property({"name": "x"})
parray.add_property({"name": "y"})
parray.add_property({"name": "z"})
parray.add_property({"name": "h"})
pcm.add_array_to_bin(parray)
def create_particles(options):
if options.type == "square":
# create the square block of particles.
start_point = Point(0, 0, 0)
end_point = Point(options.square_width, options.square_width, 0)
parray = ParticleArray()
if rank == 0:
rg = RectangleGenerator(start_point=start_point,
end_point=end_point,
particle_spacing_x1=options.particle_spacing,
particle_spacing_x2=options.particle_spacing,
density_computation_mode=Dcm.Set_Constant,
particle_density=1000.0,
mass_computation_mode=Mcm.Compute_From_Density,
particle_h=options.particle_radius,
kernel=CubicSplineKernel(2),
filled=True)
tmp = rg.get_particles()
parray.append_parray(tmp)
if rank != 0:
# add some necessary properties to the particle array.
parray.add_property({'name':'x'})
parray.add_property({'name':'y'})
parray.add_property({'name':'z'})
parray.add_property({'name':'h', 'default':options.particle_radius})
parray.add_property({'name':'rho', 'default':1000.})
parray.add_property({'name':'pid'})
parray.add_property({'name':'_tmp', 'default':0.0})
parray.add_property({'name':'m'})
else:
parray.add_property({'name':'_tmp'})
parray.add_property({'name':'pid', 'default':0.0})
return [parray]
elif options.type == "dam_break":
dam_wall = ParticleArray()
dam_fluid = ParticleArray()
if rank == 0:
radius = 0.2
dam_width=10.0
dam_height=7.0
solid_particle_h=radius
dam_particle_spacing=radius/9.
solid_particle_mass=1.0
origin_x=origin_y=0.0
fluid_particle_h=radius
fluid_density=1000.
fluid_column_height=3.0
fluid_column_width=2.0
fluid_particle_spacing=radius
# generate the left wall - a line
lg = LineGenerator(particle_mass=solid_particle_mass,
mass_computation_mode=Mcm.Set_Constant,
density_computation_mode=Dcm.Ignore,
particle_h=solid_particle_h,
start_point=Point(0, 0, 0),
end_point=Point(0, dam_height, 0),
particle_spacing=dam_particle_spacing)
tmp = lg.get_particles()
dam_wall.append_parray(tmp)
# generate one half of the base
lg.start_point = Point(dam_particle_spacing, 0, 0)
lg.end_point = Point(dam_width/2, 0, 0)
tmp = lg.get_particles()
dam_wall.append_parray(tmp)
# generate particles for the left column of fluid.
rg = RectangleGenerator(
start_point=Point(origin_x+2.0*solid_particle_h,
origin_y+2.0*solid_particle_h,
0.0),
end_point=Point(origin_x+2.0*solid_particle_h+fluid_column_width,
origin_y+2.0*solid_particle_h+fluid_column_height, 0.0),
particle_spacing_x1=fluid_particle_spacing,
particle_spacing_x2=fluid_particle_spacing,
density_computation_mode=Dcm.Set_Constant,
mass_computation_mode=Mcm.Compute_From_Density,
particle_density=1000.,
particle_h=fluid_particle_h,
kernel=CubicSplineKernel(2),
filled=True)
dam_fluid = rg.get_particles()
# generate the right wall - a line
lg = LineGenerator(particle_mass=solid_particle_mass,
mass_computation_mode=Mcm.Set_Constant,
density_computation_mode=Dcm.Ignore,
particle_h=solid_particle_h,
start_point=Point(dam_width, 0, 0),
end_point=Point(dam_width, dam_height, 0),
particle_spacing=dam_particle_spacing)
tmp = lg.get_particles()
dam_wall.append_parray(tmp)
# generate the right half of the base
lg.start_point = Point(dam_width/2.+dam_particle_spacing, 0, 0)
lg.end_point = Point(dam_width, 0, 0)
tmp = lg.get_particles()
dam_wall.append_parray(tmp)
for parray in [dam_fluid, dam_wall]:
if rank != 0:
# add some necessary properties to the particle array.
parray.add_property({'name':'x'})
parray.add_property({'name':'y'})
parray.add_property({'name':'z'})
parray.add_property({'name':'h', 'default':options.particle_radius})
parray.add_property({'name':'rho', 'default':1000.})
parray.add_property({'name':'pid'})
parray.add_property({'name':'_tmp', 'default':0.0})
parray.add_property({'name':'m'})
else:
parray.add_property({'name':'_tmp'})
parray.add_property({'name':'pid', 'default':0.0})
return [dam_fluid, dam_wall]
def create_particles(options):
if options.type == "square":
# create the square block of particles.
start_point = Point(0, 0, 0)
end_point = Point(options.square_width, options.square_width, 0)
parray = ParticleArray()
if rank == 0:
rg = RectangleGenerator(
start_point=start_point,
end_point=end_point,
particle_spacing_x1=options.particle_spacing,
particle_spacing_x2=options.particle_spacing,
density_computation_mode=Dcm.Set_Constant,
particle_density=1000.0,
mass_computation_mode=Mcm.Compute_From_Density,
particle_h=options.particle_radius,
kernel=CubicSplineKernel(2),
filled=True)
tmp = rg.get_particles()
parray.append_parray(tmp)
if rank != 0:
# add some necessary properties to the particle array.
parray.add_property({'name': 'x'})
parray.add_property({'name': 'y'})
parray.add_property({'name': 'z'})
parray.add_property({
'name': 'h',
'default': options.particle_radius
})
parray.add_property({'name': 'rho', 'default': 1000.})
parray.add_property({'name': 'pid'})
parray.add_property({'name': '_tmp', 'default': 0.0})
parray.add_property({'name': 'm'})
else:
parray.add_property({'name': '_tmp'})
parray.add_property({'name': 'pid', 'default': 0.0})
return [parray]
elif options.type == "dam_break":
dam_wall = ParticleArray()
dam_fluid = ParticleArray()
if rank == 0:
radius = 0.2
dam_width = 10.0
dam_height = 7.0
solid_particle_h = radius
dam_particle_spacing = radius / 9.
solid_particle_mass = 1.0
origin_x = origin_y = 0.0
fluid_particle_h = radius
fluid_density = 1000.
fluid_column_height = 3.0
fluid_column_width = 2.0
fluid_particle_spacing = radius
# generate the left wall - a line
lg = LineGenerator(particle_mass=solid_particle_mass,
mass_computation_mode=Mcm.Set_Constant,
density_computation_mode=Dcm.Ignore,
particle_h=solid_particle_h,
start_point=Point(0, 0, 0),
end_point=Point(0, dam_height, 0),
particle_spacing=dam_particle_spacing)
tmp = lg.get_particles()
dam_wall.append_parray(tmp)
# generate one half of the base
lg.start_point = Point(dam_particle_spacing, 0, 0)
lg.end_point = Point(dam_width / 2, 0, 0)
tmp = lg.get_particles()
dam_wall.append_parray(tmp)
# generate particles for the left column of fluid.
rg = RectangleGenerator(
start_point=Point(origin_x + 2.0 * solid_particle_h,
origin_y + 2.0 * solid_particle_h, 0.0),
end_point=Point(
origin_x + 2.0 * solid_particle_h + fluid_column_width,
origin_y + 2.0 * solid_particle_h + fluid_column_height,
0.0),
particle_spacing_x1=fluid_particle_spacing,
particle_spacing_x2=fluid_particle_spacing,
density_computation_mode=Dcm.Set_Constant,
mass_computation_mode=Mcm.Compute_From_Density,
particle_density=1000.,
particle_h=fluid_particle_h,
kernel=CubicSplineKernel(2),
filled=True)
dam_fluid = rg.get_particles()
# generate the right wall - a line
lg = LineGenerator(particle_mass=solid_particle_mass,
mass_computation_mode=Mcm.Set_Constant,
density_computation_mode=Dcm.Ignore,
particle_h=solid_particle_h,
start_point=Point(dam_width, 0, 0),
end_point=Point(dam_width, dam_height, 0),
particle_spacing=dam_particle_spacing)
tmp = lg.get_particles()
dam_wall.append_parray(tmp)
# generate the right half of the base
lg.start_point = Point(dam_width / 2. + dam_particle_spacing, 0, 0)
lg.end_point = Point(dam_width, 0, 0)
tmp = lg.get_particles()
dam_wall.append_parray(tmp)
for parray in [dam_fluid, dam_wall]:
if rank != 0:
# add some necessary properties to the particle array.
parray.add_property({'name': 'x'})
parray.add_property({'name': 'y'})
parray.add_property({'name': 'z'})
parray.add_property({
'name': 'h',
'default': options.particle_radius
})
parray.add_property({'name': 'rho', 'default': 1000.})
parray.add_property({'name': 'pid'})
parray.add_property({'name': '_tmp', 'default': 0.0})
parray.add_property({'name': 'm'})
else:
parray.add_property({'name': '_tmp'})
parray.add_property({'name': 'pid', 'default': 0.0})
return [dam_fluid, dam_wall]
logger.addHandler(logging.StreamHandler())
# local imports
from pysph.base.particle_array import ParticleArray
from pysph.parallel.parallel_cell import ParallelCellManager
from pysph.solver.basic_generators import LineGenerator
from pysph.base.cell import INT_INF
from pysph.base.point import *
pcm = ParallelCellManager(initialize=False, dimension=1)
parray = ParticleArray(name='parray')
if rank == 0:
lg = LineGenerator(start_point=Point(0, 0, 0),
end_point=Point(1.0, 0, 0),
particle_spacing=0.01)
x, y, z = lg.get_coords()
parray.add_property({'name': 'x', 'data': x})
parray.add_property({'name': 'y', 'data': y})
parray.add_property({'name': 'z', 'data': z})
parray.add_property({'name': 'h'})
parray.align_particles()
parray.h[:] = 0.01
else:
parray.add_property({'name': 'x'})
parray.add_property({'name': 'y'})
parray.add_property({'name': 'z'})
parray.add_property({'name': 'h'})
def test():
pcm = ParallelCellManager(initialize=False)
# create 2 particles, one with proc 0 another with proc 1
lg = LineGenerator(particle_spacing=0.5)
lg.start_point.x = 0.0
lg.end_point.x = 10.0
lg.start_point.y = lg.start_point.z = 0.0
lg.end_point.y = lg.end_point.z = 0.0
x, y, z = lg.get_coords()
num_particles = len(x)
logger.info('Num particles : %d'%(len(x)))
parray = ParticleArray(name='p1',
x={'data':x},
y={'data':y},
z={'data':z},
h={'data':None, 'default':0.5})
# add parray to the cell manager
parray.add_property({'name':'u'})
parray.add_property({'name':'v'})
parray.add_property({'name':'w'})
parray.add_property({'name':'rho'})
parray.add_property({'name':'p'})
parray = LoadBalancer.distribute_particles(parray, num_procs, 1.0)[rank]
pcm.add_array_to_bin(parray)
np = pcm.arrays_to_bin[0].num_real_particles
nptot = comm.bcast(comm.reduce(np))
assert nptot == num_particles
pcm.initialize()
np = pcm.arrays_to_bin[0].num_real_particles
nptot = comm.bcast(comm.reduce(np))
assert nptot == num_particles
pcm.set_jump_tolerance(INT_INF())
logger.debug('%d: num_cells=%d'%(rank,len(pcm.cells_dict)))
logger.debug('%d:'%rank + ('\n%d '%rank).join([str(c) for c in pcm.cells_dict.values()]))
# on processor 0 move all particles from one of its cell to the next cell
if rank == 0:
cell = pcm.cells_dict.get(list(pcm.proc_map.cell_map.values()[0])[0])
logger.debug('Cell is %s'%(cell))
indices = []
cell.get_particle_ids(indices)
indices = indices[0]
logger.debug('Num particles in Cell is %d'%(indices.length))
parr = cell.arrays_to_bin[0]
x, y, z = parr.get('x', 'y', 'z', only_real_particles=False)
logger.debug(str(len(x)) + str(x))
logger.debug(str(indices.length) + str(indices.get_npy_array()))
for i in range(indices.length):
x[indices[i]] += cell.cell_size
parr.set_dirty(True)
pcm.update_status()
logger.debug('Calling cell manager update')
logger.debug('Is dirty %s'%(pcm.is_dirty))
pcm.update()
np = pcm.arrays_to_bin[0].num_real_particles
nptot = comm.bcast(comm.reduce(np))
assert nptot == num_particles
#logger.debug('hierarchy :%s'%(pcm.hierarchy_list))
logger.debug('cells : %s'%(pcm.cells_dict))
logger.debug('num particles : %d'%(parray.get_number_of_particles()))
logger.debug('real particles : %d'%(parray.num_real_particles))
logger.addHandler(logging.StreamHandler())
# local imports
from pysph.base.particle_array import ParticleArray
from pysph.parallel.parallel_cell import ParallelCellManager
from pysph.solver.basic_generators import LineGenerator
from pysph.base.cell import INT_INF
from pysph.base.point import *
from pysph.parallel.load_balancer import LoadBalancer
pcm = ParallelCellManager(initialize=False)
# create 2 particles, one with proc 0 another with proc 1
lg = LineGenerator(particle_spacing=0.5)
lg.start_point.x = 0.0
lg.end_point.x = 10.0
lg.start_point.y = lg.start_point.z = 0.0
lg.end_point.y = lg.end_point.z = 0.0
x, y, z = lg.get_coords()
num_particles = len(x)
logger.info('Num particles : %d' % (len(x)))
parray = ParticleArray(name='p1',
x={'data': x},
y={'data': y},
z={'data': z},