def test_last ( self ):
# Make an annotation
annid = makeAnno ( 2, SITE_HOST )
# set the type
synapse_type = random.randint (0,100)
url = "http://%s/ca/%s/%s/setField/synapse_type/%s/" % ( SITE_HOST, 'unittest',str(annid), synapse_type )
req = urllib2.Request ( url )
f = urllib2.urlopen ( url )
assert f.read()==''
# get the synapse_type
url = "http://%s/ca/%s/%s/getField/synapse_type/" % ( SITE_HOST, 'unittest',str(annid))
req = urllib2.Request ( url )
f = urllib2.urlopen ( url )
assert synapse_type == int(f.read())
# set the weight
weight = random.random ()
url = "http://%s/ca/%s/%s/setField/weight/%s/" % ( SITE_HOST, 'unittest',str(annid), weight )
req = urllib2.Request ( url )
f = urllib2.urlopen ( url )
assert f.read()==''
# get the weight
url = "http://%s/ca/%s/%s/getField/weight/" % ( SITE_HOST, 'unittest',str(annid))
req = urllib2.Request ( url )
f = urllib2.urlopen ( url )
assert weight - float(f.read()) < 0.001
# check inheritance
# set the status
status = random.randint (0,100)
url = "http://%s/ca/%s/%s/setField/status/%s/" % ( SITE_HOST, 'unittest',str(annid), status )
req = urllib2.Request ( url )
f = urllib2.urlopen ( url )
assert f.read()==''
# get the status
url = "http://%s/ca/%s/%s/getField/status/" % ( SITE_HOST, 'unittest',str(annid))
req = urllib2.Request ( url )
f = urllib2.urlopen ( url )
assert status == int(f.read())
def test_query (self):
"""Test the function that lists objects of different types."""
# synapse annotations
anntype = 2
status = random.randint(0,100)
confidence = random.random()*0.3+0.1 # number between 0.1 and 0.4
synapse_type = random.randint(0,100)
synapse_weight = random.random()*0.9+0.1 # number between 0.1 and 0.9
for i in range (10):
# Make an annotation
annid = makeAnno ( anntype, SITE_HOST )
# set some fields in the even annotations
if i % 2 == 0:
url = "http://%s/ca/%s/%s/setField/status/%s/" % ( SITE_HOST, 'unittest',str(annid), status )
req = urllib2.Request ( url )
f = urllib2.urlopen ( url )
assert f.read()==''
# set the confidence
url = "http://%s/ca/%s/%s/setField/confidence/%s/" % ( SITE_HOST, 'unittest',str(annid), confidence )
req = urllib2.Request ( url )
f = urllib2.urlopen ( url )
assert f.read()==''
# set the type
url = "http://%s/ca/%s/%s/setField/synapse_type/%s/" % ( SITE_HOST, 'unittest',str(annid), synapse_type )
req = urllib2.Request ( url )
f = urllib2.urlopen ( url )
assert f.read()==''
# set some fields in the even annotations
if i % 2 == 1:
# set the confidence
url = "http://%s/ca/%s/%s/setField/confidence/%s/" % ( SITE_HOST, 'unittest',str(annid), 1.0-confidence )
req = urllib2.Request ( url )
f = urllib2.urlopen ( url )
assert f.read()==''
# check the status
url = "http://%s/ca/%s/query/status/%s/" % ( SITE_HOST, 'unittest', status )
req = urllib2.Request ( url )
f = urllib2.urlopen ( url )
retfile = tempfile.NamedTemporaryFile ( )
retfile.write ( f.read() )
retfile.seek(0)
h5ret = h5py.File ( retfile.name, driver='core', backing_store=False )
assert h5ret['ANNOIDS'].shape[0] ==5
# check all the confidence variants
url = "http://%s/ca/%s/query/confidence/%s/%s/" % ( SITE_HOST, 'unittest', 'lt', 1.0-confidence-0.0001 )
req = urllib2.Request ( url )
f = urllib2.urlopen ( url )
retfile = tempfile.NamedTemporaryFile ( )
retfile.write ( f.read() )
retfile.seek(0)
h5ret = h5py.File ( retfile.name, driver='core', backing_store=False )
assert h5ret['ANNOIDS'].shape[0] ==5
url = "http://%s/ca/%s/query/confidence/%s/%s/" % ( SITE_HOST, 'unittest', 'gt', confidence+0.00001 )
req = urllib2.Request ( url )
f = urllib2.urlopen ( url )
retfile = tempfile.NamedTemporaryFile ( )
retfile.write ( f.read() )
retfile.seek(0)
h5ret = h5py.File ( retfile.name, driver='core', backing_store=False )
assert h5ret['ANNOIDS'].shape[0] ==5
def test_fields (self):
"""Test the getField and setField"""
# Make an annotation
annid = makeAnno ( 1, SITE_HOST )
# set the status
status = random.randint (0,100)
url = "http://%s/ca/%s/%s/setField/status/%s/" % ( SITE_HOST, 'unittest',str(annid), status )
req = urllib2.Request ( url )
f = urllib2.urlopen ( url )
assert f.read()==''
# get the status
url = "http://%s/ca/%s/%s/getField/status/" % ( SITE_HOST, 'unittest',str(annid))
req = urllib2.Request ( url )
f = urllib2.urlopen ( url )
assert status == int(f.read())
# set the confidence
confidence = random.random ()
url = "http://%s/ca/%s/%s/setField/confidence/%s/" % ( SITE_HOST, 'unittest',str(annid), confidence )
req = urllib2.Request ( url )
f = urllib2.urlopen ( url )
assert f.read()==''
# get the confidence
url = "http://%s/ca/%s/%s/getField/confidence/" % ( SITE_HOST, 'unittest',str(annid))
req = urllib2.Request ( url )
f = urllib2.urlopen ( url )
assert confidence - float(f.read()) < 0.001
# get the author
url = "http://%s/ca/%s/%s/getField/author/" % ( SITE_HOST, 'unittest',str(annid))
req = urllib2.Request ( url )
f = urllib2.urlopen ( url )
assert 'Unit Test' == f.read()
# Make a synapse
annid = makeAnno ( 2, SITE_HOST )
# set the type
synapse_type = random.randint (0,100)
url = "http://%s/ca/%s/%s/setField/synapse_type/%s/" % ( SITE_HOST, 'unittest',str(annid), synapse_type )
req = urllib2.Request ( url )
f = urllib2.urlopen ( url )
assert f.read()==''
# get the synapse_type
url = "http://%s/ca/%s/%s/getField/synapse_type/" % ( SITE_HOST, 'unittest',str(annid))
req = urllib2.Request ( url )
f = urllib2.urlopen ( url )
assert synapse_type == int(f.read())
# set the weight
weight = random.random ()
url = "http://%s/ca/%s/%s/setField/weight/%s/" % ( SITE_HOST, 'unittest',str(annid), weight )
req = urllib2.Request ( url )
f = urllib2.urlopen ( url )
assert f.read()==''
# get the weight
url = "http://%s/ca/%s/%s/getField/weight/" % ( SITE_HOST, 'unittest',str(annid))
req = urllib2.Request ( url )
f = urllib2.urlopen ( url )
assert weight - float(f.read()) < 0.001
# check inheritance
# set the status
status = random.randint (0,100)
url = "http://%s/ca/%s/%s/setField/status/%s/" % ( SITE_HOST, 'unittest',str(annid), status )
req = urllib2.Request ( url )
f = urllib2.urlopen ( url )
assert f.read()==''
# get the status
url = "http://%s/ca/%s/%s/getField/status/" % ( SITE_HOST, 'unittest',str(annid))
req = urllib2.Request ( url )
f = urllib2.urlopen ( url )
assert status == int(f.read())
# Make a seed
annid = makeAnno ( 3, SITE_HOST )
# set the parent
parent = random.randint (0,100)
url = "http://%s/ca/%s/%s/setField/parent/%s/" % ( SITE_HOST, 'unittest',str(annid), parent )
req = urllib2.Request ( url )
f = urllib2.urlopen ( url )
assert f.read()==''
# get the parent
url = "http://%s/ca/%s/%s/getField/parent/" % ( SITE_HOST, 'unittest',str(annid))
req = urllib2.Request ( url )
f = urllib2.urlopen ( url )
assert parent == int(f.read())
# set the source
source = random.randint (0,100)
url = "http://%s/ca/%s/%s/setField/source/%s/" % ( SITE_HOST, 'unittest',str(annid), source )
req = urllib2.Request ( url )
f = urllib2.urlopen ( url )
assert f.read()==''
# get the source
url = "http://%s/ca/%s/%s/getField/source/" % ( SITE_HOST, 'unittest',str(annid))
req = urllib2.Request ( url )
f = urllib2.urlopen ( url )
assert source == int(f.read())
# set the cubelocation
cubelocation = random.randint (0,100)
url = "http://%s/ca/%s/%s/setField/cubelocation/%s/" % ( SITE_HOST, 'unittest',str(annid), cubelocation )
req = urllib2.Request ( url )
f = urllib2.urlopen ( url )
assert f.read()==''
# get the cubelocation
url = "http://%s/ca/%s/%s/getField/cubelocation/" % ( SITE_HOST, 'unittest',str(annid))
req = urllib2.Request ( url )
f = urllib2.urlopen ( url )
assert cubelocation == int(f.read())
# Make a segment
annid = makeAnno ( 4, SITE_HOST )
# set the parentseed
parentseed = random.randint (0,100)
url = "http://%s/ca/%s/%s/setField/parentseed/%s/" % ( SITE_HOST, 'unittest',str(annid), parentseed )
req = urllib2.Request ( url )
f = urllib2.urlopen ( url )
assert f.read()==''
# get the parentseed
url = "http://%s/ca/%s/%s/getField/parentseed/" % ( SITE_HOST, 'unittest',str(annid))
req = urllib2.Request ( url )
f = urllib2.urlopen ( url )
assert parentseed == int(f.read())
# set the segmentclass
segmentclass = random.randint (0,100)
url = "http://%s/ca/%s/%s/setField/segmentclass/%s/" % ( SITE_HOST, 'unittest',str(annid), segmentclass )
req = urllib2.Request ( url )
f = urllib2.urlopen ( url )
assert f.read()==''
# get the segmentclass
url = "http://%s/ca/%s/%s/getField/segmentclass/" % ( SITE_HOST, 'unittest',str(annid))
req = urllib2.Request ( url )
f = urllib2.urlopen ( url )
assert segmentclass == int(f.read())
# set the neuron
neuron = random.randint (0,100)
url = "http://%s/ca/%s/%s/setField/neuron/%s/" % ( SITE_HOST, 'unittest',str(annid), neuron )
req = urllib2.Request ( url )
f = urllib2.urlopen ( url )
assert f.read()==''
# get the neuron
url = "http://%s/ca/%s/%s/getField/neuron/" % ( SITE_HOST, 'unittest',str(annid))
req = urllib2.Request ( url )
f = urllib2.urlopen ( url )
assert neuron == int(f.read())
# check inheritance
# set the status
status = random.randint (0,100)
url = "http://%s/ca/%s/%s/setField/status/%s/" % ( SITE_HOST, 'unittest',str(annid), status )
req = urllib2.Request ( url )
f = urllib2.urlopen ( url )
assert f.read()==''
# get the status
url = "http://%s/ca/%s/%s/getField/status/" % ( SITE_HOST, 'unittest',str(annid))
req = urllib2.Request ( url )
f = urllib2.urlopen ( url )
assert status == int(f.read())
# Make a neuron
annid = makeAnno ( 5, SITE_HOST )
# no independently set fields
# check inheritance
# set the status
status = random.randint (0,100)
url = "http://%s/ca/%s/%s/setField/status/%s/" % ( SITE_HOST, 'unittest',str(annid), status )
req = urllib2.Request ( url )
f = urllib2.urlopen ( url )
assert f.read()==''
# get the status
url = "http://%s/ca/%s/%s/getField/status/" % ( SITE_HOST, 'unittest',str(annid))
req = urllib2.Request ( url )
f = urllib2.urlopen ( url )
assert status == int(f.read())
# Make an organelle
annid = makeAnno ( 6, SITE_HOST )
# set the parentseed
parentseed = random.randint (0,100)
url = "http://%s/ca/%s/%s/setField/parentseed/%s/" % ( SITE_HOST, 'unittest',str(annid), parentseed )
req = urllib2.Request ( url )
f = urllib2.urlopen ( url )
assert f.read()==''
# get the parentseed
url = "http://%s/ca/%s/%s/getField/parentseed/" % ( SITE_HOST, 'unittest',str(annid))
req = urllib2.Request ( url )
f = urllib2.urlopen ( url )
assert parentseed == int(f.read())
# set the organelleclass
organelleclass = random.randint (0,100)
url = "http://%s/ca/%s/%s/setField/organelleclass/%s/" % ( SITE_HOST, 'unittest',str(annid), organelleclass )
req = urllib2.Request ( url )
f = urllib2.urlopen ( url )
assert f.read()==''
# get the organelleclass
url = "http://%s/ca/%s/%s/getField/organelleclass/" % ( SITE_HOST, 'unittest',str(annid))
req = urllib2.Request ( url )
f = urllib2.urlopen ( url )
assert organelleclass == int(f.read())
# check inheritance
# set the status
status = random.randint (0,100)
url = "http://%s/ca/%s/%s/setField/status/%s/" % ( SITE_HOST, 'unittest',str(annid), status )
req = urllib2.Request ( url )
f = urllib2.urlopen ( url )
assert f.read()==''
# get the status
url = "http://%s/ca/%s/%s/getField/status/" % ( SITE_HOST, 'unittest',str(annid))
req = urllib2.Request ( url )
f = urllib2.urlopen ( url )
assert status == int(f.read())
# TODO error caes.
# bad format to a number
url = "http://%s/ca/%s/%s/setField/status/aa/" % ( SITE_HOST, 'unittest',str(annid))
with pytest.raises(urllib2.HTTPError):
req = urllib2.Request ( url )
f = urllib2.urlopen ( url )
# RBTODO add tests key/value and compound fields.
# assign a field for a wrong annotation type
# url = "http://%s/ca/%s/%s/setField/segmentclass/2/" % ( SITE_HOST, 'unittest',str(annid))
# with pytest.raises(urllib2.HTTPError):
# req = urllib2.Request ( url )
# f = urllib2.urlopen ( url )
# assign a missing field
# url = "http://%s/ca/%s/%s/setField/nonesuch/2/" % ( SITE_HOST, 'unittest',str(annid))
# with pytest.raises(urllib2.HTTPError):
# req = urllib2.Request ( url )
# f = urllib2.urlopen ( url )
# request a missing field
url = "http://%s/ca/%s/%s/getField/othernonesuch/" % ( SITE_HOST, 'unittest',str(annid))
with pytest.raises(urllib2.HTTPError):
req = urllib2.Request ( url )
f = urllib2.urlopen ( url )
