def test_io():
from pytfa.io.dict import model_to_dict, model_from_dict
from pytfa.optim.utils import copy_solver_configuration
dictmodel = model_to_dict(tmodel)
new = model_from_dict(dictmodel)
copy_solver_configuration(tmodel, new)
def copy(self):
from ..io.dict import model_from_dict, model_to_dict
dictmodel = model_to_dict(self)
new = model_from_dict(dictmodel)
copy_solver_configuration(self, new)
return new
def test_io():
from pytfa.io.dict import model_to_dict, model_from_dict
from pytfa.optim.utils import copy_solver_configuration
dictmodel = model_to_dict(small_tmodel)
new = model_from_dict(dictmodel)
copy_solver_configuration(small_tmodel, new)
sol_orig = small_tmodel.slim_optimize()
sol_new = new.slim_optimize()
epsilon = new.solver.configuration.tolerances.optimality
assert (abs(sol_new - sol_orig) < epsilon)
def test_io():
from pytfa.io.dict import model_to_dict, model_from_dict
from pytfa.optim.utils import copy_solver_configuration
dictmodel = model_to_dict(small_tmodel)
new = model_from_dict(dictmodel)
copy_solver_configuration(small_tmodel, new)
sol_orig = small_tmodel.slim_optimize()
sol_new = new.slim_optimize()
epsilon = 1e-5 # new.solver.configuration.tolerances.optimality is deprecated in GLPK now, see opencobra/optlang/issues/223
assert (abs(sol_new - sol_orig) < epsilon)