def _loadInput(self):
partsFile = self.inputParticles.get().getFileName()
inPartsSet = SetOfParticles(filename=partsFile)
inPartsSet.loadAllProperties()
if self.check == None:
writeSetOfParticles(inPartsSet,
self.fnInputMd,
alignType=em.ALIGN_NONE,
orderBy='creation')
else:
writeSetOfParticles(inPartsSet,
self.fnInputMd,
alignType=em.ALIGN_NONE,
orderBy='creation',
where='creation>"' + str(self.check) + '"')
writeSetOfParticles(inPartsSet,
self.fnInputOldMd,
alignType=em.ALIGN_NONE,
orderBy='creation',
where='creation<"' + str(self.check) + '"')
for p in inPartsSet.iterItems(orderBy='creation', direction='DESC'):
self.check = p.getObjCreation()
break
streamClosed = inPartsSet.isStreamClosed()
inputSize = inPartsSet.getSize()
inPartsSet.close()
return inputSize, streamClosed
def loadInputs(self):
micsFn = self.getInputMicrographs().getFileName()
micsSet = SetOfMicrographs(filename=micsFn)
micsSet.loadAllProperties()
availableMics = []
for mic in micsSet:
availableMics.append(mic.getObjId())
micsSetClosed = micsSet.isStreamClosed()
micsSet.close()
partsFn = self.getInputParticles().getFileName()
partsSet = SetOfParticles(filename=partsFn)
partsSet.loadAllProperties()
newParts = []
newMics = []
for item in partsSet:
micKey = item.getCoordinate().getMicId()
if micKey not in self.micsDone and micKey in availableMics:
newParts.append(item.getObjId())
if not micKey in self.micsDone:
newMics.append(micKey)
self.micsDone += newMics
self.inputSize = partsSet.getSize()
partSetClosed = partsSet.isStreamClosed()
partsSet.close()
return newParts, micsSetClosed and partSetClosed
