def runChange(self, objId, labelToChange, category):
self.experiment = self.readExperiment(self.inputExperiment.get().fnPKPD)
currentUnit = self.experiment.getVarUnits(self.labelToChange.get())
newUnit = unitFromString(self._getNewUnit())
K=convertUnits(1.0,currentUnit,newUnit)
variable = self.experiment.variables[self.labelToChange.get()]
for sampleName, sample in self.experiment.samples.iteritems():
if variable.varName == "dose":
pass
else:
if variable.role == PKPDVariable.ROLE_LABEL:
varValue = float(sample.descriptors[variable.varName])
sample.descriptors[variable.varName] = K*varValue
elif variable.role == PKPDVariable.ROLE_MEASUREMENT:
newValues = []
for x in sample.getValues(variable.varName):
if x=="NA" or x=="LLOQ" or x=="ULOQ":
newValues.append(x)
else:
newValues.append(str(K*float(x)))
sample.setValues(variable.varName,newValues)
elif variable.role == PKPDVariable.ROLE_TIME:
newValues = []
for x in sample.getValues(variable.varName):
newValues.append(str(K*float(x)))
sample.setValues(variable.varName,newValues)
variable.units = PKPDUnit()
variable.units.unit = newUnit
self.writeExperiment(self.experiment,self._getPath("experiment.pkpd"))
def calculateParameterUnits(self,sample):
xunits = unitFromString("min")
yunits = self.experiment.getVarUnits(self.yName[0])
Vunits = divideUnits(self.Dunits,yunits)
Clunits = divideUnits(Vunits,xunits)
self.parameterUnits = [Clunits,Vunits,PKPDUnit.UNIT_NONE]
return self.parameterUnits
def runChange(self, objId, labelToChange, category):
self.experiment = self.readExperiment(
self.inputExperiment.get().fnPKPD)
currentUnit = self.experiment.getVarUnits(self.labelToChange.get())
newUnit = unitFromString(self._getNewUnit())
K = convertUnits(1.0, currentUnit, newUnit)
variable = self.experiment.variables[self.labelToChange.get()]
for sampleName, sample in self.experiment.samples.iteritems():
if variable.varName == "dose":
pass
else:
if variable.role == PKPDVariable.ROLE_LABEL:
varValue = float(sample.descriptors[variable.varName])
sample.descriptors[variable.varName] = K * varValue
elif variable.role == PKPDVariable.ROLE_MEASUREMENT:
newValues = []
for x in sample.getValues(variable.varName):
if x == "NA" or x == "LLOQ" or x == "ULOQ":
newValues.append(x)
else:
newValues.append(str(K * float(x)))
sample.setValues(variable.varName, newValues)
elif variable.role == PKPDVariable.ROLE_TIME:
newValues = []
for x in sample.getValues(variable.varName):
newValues.append(str(K * float(x)))
sample.setValues(variable.varName, newValues)
variable.units = PKPDUnit()
variable.units.unit = newUnit
self.writeExperiment(self.experiment, self._getPath("experiment.pkpd"))
def calculateParameterUnits(self,sample):
xunits = unitFromString("min")
yunits = self.experiment.getVarUnits(self.yName[0])
Vunits = divideUnits(self.Dunits,yunits)
Clunits = divideUnits(Vunits,xunits)
Vmaxunits = multiplyUnits(Clunits,yunits)
self.parameterUnits = [Vmaxunits,yunits,Vunits,Clunits,Vunits,Clunits,Vunits]
return self.parameterUnits
def _validate(self):
errors=[]
experiment = self.readExperiment(self.inputExperiment.get().fnPKPD, False)
if not self.labelToChange.get() in experiment.variables:
errors.append("Cannot find %s as variable"%self.labelToChange)
else:
variable = experiment.variables[self.labelToChange.get()]
if variable.varType!=PKPDVariable.TYPE_NUMERIC:
errors.append("%s is not a numeric variable"%variable.varName)
else:
currentUnit = experiment.getVarUnits(self.labelToChange.get())
newUnit = unitFromString(self._getNewUnit())
try:
K=convertUnits(1,currentUnit,newUnit)
if K==None:
errors.append("Unknown conversion from %s to %s. If it makes sense and it is not implemented you may contact [email protected]"%\
(strUnit(currentUnit),strUnit(newUnit)))
except:
errors.append("Unknown conversion from %s to %s. If it makes sense and it is not implemented you may contact [email protected]"%(currentUnit,newUnit))
return errors
def _validate(self):
errors = []
experiment = self.readExperiment(self.inputExperiment.get().fnPKPD,
False)
if not self.labelToChange.get() in experiment.variables:
errors.append("Cannot find %s as variable" % self.labelToChange)
else:
variable = experiment.variables[self.labelToChange.get()]
if variable.varType != PKPDVariable.TYPE_NUMERIC:
errors.append("%s is not a numeric variable" %
variable.varName)
else:
currentUnit = experiment.getVarUnits(self.labelToChange.get())
newUnit = unitFromString(self._getNewUnit())
try:
K = convertUnits(1, currentUnit, newUnit)
if K == None:
errors.append("Unknown conversion from %s to %s. If it makes sense and it is not implemented you may contact [email protected]"%\
(strUnit(currentUnit),strUnit(newUnit)))
except:
errors.append(
"Unknown conversion from %s to %s. If it makes sense and it is not implemented you may contact [email protected]"
% (currentUnit, newUnit))
return errors