if n <>2:
usage("This script accepts 1 parameter: the project name.")
projName = sys.argv[1]
path = os.path.join(os.environ['SCIPION_HOME'], 'pyworkflow', 'gui', 'no-tkinter')
sys.path.insert(1, path)
# Create a new project
manager = Manager()
if not manager.hasProject(projName):
usage("There is no project with this name: %s"
% pwutils.red(projName))
# the project may be a soft link which may be unavailable to the cluster so get the real path
try:
projectPath = os.readlink(manager.getProjectPath(projName))
except:
projectPath = manager.getProjectPath(projName)
project = Project(projectPath)
project.load()
runs = project.getRuns()
# Now assuming that there is no dependencies between runs
# and the graph is lineal
for prot in runs:
project.scheduleProtocol(prot)
manager = Manager()
if not manager.hasProject(projName):
usage("There is no project with this name: %s"
% pwutils.red(projName))
# the project may be a soft link which may be unavailable to the cluster so get the real path
try:
projectPath = os.readlink(manager.getProjectPath(projName))
except:
projectPath = manager.getProjectPath(projName)
project = Project(pw.Config.getDomain(), projectPath)
project.load()
runs = project.getRuns()
# Now assuming that there is no dependencies between runs
# and the graph is lineal
for prot in runs:
protClassName = prot.getClassName()
protLabelName = prot.getObjLabel()
if (protClassName not in sys.argv[3:] and
protLabelName not in sys.argv[3:]):
project.scheduleProtocol(prot)
# Wait 1 seconds to avoid concurrent activity
time.sleep(0.7)
else:
print(pwutils.blueStr("\nNot scheduling '%s' protocol named '%s'.\n"
% (protClassName, protLabelName)))
# the project may be a soft link which may be unavailable to the cluster
# so get the real path
try:
projectPath = os.readlink(manager.getProjectPath(projName))
except:
projectPath = manager.getProjectPath(projName)
project = Project(pw.Config.getDomain(), projectPath)
project.load()
runGraph = project.getRunsGraph()
roots = runGraph.getRootNodes()
# Now assuming that there is no dependencies between runs
# and the graph is lineal
for root in roots:
for child in root.getChilds():
workflow, _ = project._getWorkflowFromProtocol(child.run)
for prot, level in workflow.values():
protClassName = prot.getClassName()
protLabelName = prot.getObjLabel()
if (protClassName not in sys.argv[3:] and
protLabelName not in sys.argv[3:]):
project.scheduleProtocol(prot,
initialSleepTime=level*INITIAL_SLEEP_TIME)
else:
print(pwutils.blueStr("\nNot scheduling '%s' protocol named '%s'.\n"
% (protClassName, protLabelName)))