def test_context_does_not_have_trim_length(self):
proctype = 'deblur'
trim = 42
msg = "Cannot find %s-%dnt for 16S data" % (proctype, trim)
with self.assertRaisesRegex(ValueError, msg):
_determine_context(proctype, trim)
def test_context_without_processing_type(self):
proctype = 'something wrong'
trim = 113
msg = "Cannot find %s-%dnt for 16S data" % (proctype, trim)
with self.assertRaisesRegex(ValueError, msg):
_determine_context(proctype, trim)
def test_fetch_454_study(self):
proctype = 'closed-reference'
trim = 100
instrument = 'flx'
ctx = _determine_context(proctype, trim, instrument)
self.assertIn('closed-reference', ctx.lower())
self.assertIn('100nt', ctx.lower())
self.assertIn('flx', ctx.lower())
def test_valid_closed_reference_context(self):
proctype = 'closed-reference'
trim = 100
ctx = _determine_context(proctype, trim)
self.assertIn('closed-reference', ctx.lower())
self.assertIn('100nt', ctx.lower())
def test_valid_deblur_context(self):
proctype = 'deblur'
trim = 100
ctx = _determine_context(proctype, trim)
self.assertIn('deblur', ctx.lower())
self.assertIn('100nt', ctx.lower())