def test_save_rarefaction_data(self):
"""save_rarefaction_data: This tests the rarefaction average output"""
exp = [
"# test.txt\n",
"# SampleID\n",
"xaxis: 10.0\t\n",
"xmax: 140\n",
">> Sample1\n",
"color #7fff00\n",
"series ",
"2.03172\t9.441785\t12.508435\t\n",
"error ",
"nan\tnan\tnan\t\n",
]
obs = save_rarefaction_data(
self.ave_seqs_per_sample1,
self.data["xaxis"],
self.xmax,
self.mapping_category,
self.colors2,
"test.txt",
self.data_colors,
self.groups,
self.std_type,
)
self.assertEqual(obs, exp)
def test_save_rarefaction_data(self):
'''save_rarefaction_data: This tests the rarefaction average output'''
exp=['# test.txt\n', '# SampleID\n', 'xaxis: 10.0\t\n', 'xmax: 140\n', '>> Sample1\n', 'color #7fff00\n', 'series ', '2.03172\t9.441785\t12.508435\t\n', 'error ', 'nan\tnan\tnan\t\n']
obs=save_rarefaction_data(self.ave_seqs_per_sample1,self.data['xaxis'],\
self.xmax,self.mapping_category,self.colors2,\
'test.txt',self.data_colors,self.groups)
self.assertEqual(obs,exp)