def test_peek_visualization_as_artifact(self):
fp = os.path.join(self.test_dir.name, 'visualization.qzv')
visualization = Visualization._from_data_dir(self.data_dir,
self.provenance)
visualization.save(fp)
with self.assertRaisesRegex(
TypeError, 'Artifact does not support.*Visualization'):
Artifact.peek(fp)
def inspect_artifact(uuid):
try:
metadata = Artifact.peek(ARTIFACTS[uuid])
except Exception:
abort(404)
return jsonify({'uuid': metadata.uuid, 'type': metadata.type})
def inspect_artifact(uuid):
try:
metadata = Artifact.peek(ARTIFACTS[uuid])
except Exception:
abort(404)
return jsonify({'uuid': metadata.uuid, 'type': metadata.type})
def test_peek(self):
artifact = Artifact.import_data(FourInts, [0, 0, 42, 1000])
fp = os.path.join(self.test_dir.name, 'artifact.qza')
artifact.save(fp)
metadata = Artifact.peek(fp)
self.assertIsInstance(metadata, ResultMetadata)
self.assertEqual(metadata.type, 'FourInts')
self.assertEqual(metadata.uuid, str(artifact.uuid))
self.assertEqual(metadata.format, 'FourIntsDirectoryFormat')
def test_peek(self):
artifact = Artifact.import_data(FourInts, [0, 0, 42, 1000])
fp = os.path.join(self.test_dir.name, 'artifact.qza')
artifact.save(fp)
metadata = Artifact.peek(fp)
self.assertIsInstance(metadata, ResultMetadata)
self.assertEqual(metadata.type, 'FourInts')
self.assertEqual(metadata.uuid, str(artifact.uuid))
self.assertEqual(metadata.format, 'FourIntsDirectoryFormat')
def test_peek(self):
artifact = Artifact._from_view([0, 0, 42, 1000], FourInts, None)
fp = os.path.join(self.test_dir.name, 'artifact.qza')
artifact.save(fp)
metadata = Artifact.peek(fp)
self.assertIsInstance(metadata, ResultMetadata)
self.assertEqual(metadata.type, FourInts)
self.assertIsNone(metadata.provenance)
self.assertEqual(metadata.uuid, artifact.uuid)
def test_peek_with_provenance(self):
artifact = Artifact._from_view({'foo': 'bar', 'baz': 'bazz'}, Mapping,
self.provenance)
fp = os.path.join(self.test_dir.name, 'artifact.qza')
artifact.save(fp)
metadata = Artifact.peek(fp)
self.assertIsInstance(metadata, ResultMetadata)
self.assertEqual(metadata.type, Mapping)
self.assertEqual(metadata.provenance, self.provenance)
self.assertEqual(metadata.uuid, artifact.uuid)
def get_artifacts():
global ARTIFACTS
ARTIFACTS = {}
path = os.getcwd()
artifact_paths = list(glob.glob(os.path.join(path, '*.qza')))
artifacts = []
for artifact_path in artifact_paths:
try:
metadata = Artifact.peek(artifact_path)
name, _ = os.path.splitext(os.path.basename(artifact_path))
artifacts.append(
_result_record(metadata, name, '.inspect_artifact'))
ARTIFACTS[str(metadata.uuid)] = artifact_path
except Exception:
pass # TODO: do better things when this happens
return jsonify({'artifacts': artifacts})
def get_artifacts():
global ARTIFACTS
ARTIFACTS = {}
path = os.getcwd()
artifact_paths = list(glob.glob(os.path.join(path, '*.qza')))
artifacts = []
for artifact_path in artifact_paths:
try:
metadata = Artifact.peek(artifact_path)
name, _ = os.path.splitext(os.path.basename(artifact_path))
artifacts.append(
_result_record(metadata, name, '.inspect_artifact'))
ARTIFACTS[metadata.uuid] = artifact_path
except Exception:
pass # TODO: do better things when this happens
return jsonify({'artifacts': artifacts})
