def test_write_trunc_qual(self):
""" writes truncated qual scores out in correct format """
seq_order = ['seq1', 'seq2', 'seq3']
output_dir = '/tmp/truncate_fasta_qual_test/'
create_dir(output_dir)
qual_out_fp = output_dir + 'seqs_filtered.qual'
write_trunc_qual(trunc_qual_scores, qual_out_fp, seq_order)
# Needs to correctly insert newline after every 60 base calls
expected_scores = expected_qual_scores
actual_qual = open(qual_out_fp, "U")
actual_qual = [line.strip() for line in actual_qual]
self.assertEqual(actual_qual, expected_scores)
def test_write_trunc_qual(self):
""" writes truncated qual scores out in correct format """
seq_order = ['seq1', 'seq2', 'seq3']
output_dir = '/tmp/truncate_fasta_qual_test/'
create_dir(output_dir)
qual_out_fp = output_dir + 'seqs_filtered.qual'
write_trunc_qual(trunc_qual_scores, qual_out_fp, seq_order)
# Needs to correctly insert newline after every 60 base calls
expected_scores = expected_qual_scores
actual_qual = open(qual_out_fp, "U")
actual_qual = [line.strip() for line in actual_qual]
self.assertEqual(actual_qual, expected_scores)