def test_uccsd_hf_qpUCCD(self):
""" paired uccd test """
optimizer = SLSQP(maxiter=100)
initial_state = HartreeFock(
self.fermionic_transformation.molecule_info['num_orbitals'],
self.fermionic_transformation.molecule_info['num_particles'],
qubit_mapping=self.fermionic_transformation._qubit_mapping,
two_qubit_reduction=self.fermionic_transformation._two_qubit_reduction)
var_form = UCCSD(
num_orbitals=self.fermionic_transformation.molecule_info['num_orbitals'],
num_particles=self.fermionic_transformation.molecule_info['num_particles'],
active_occupied=None, active_unoccupied=None,
initial_state=initial_state,
qubit_mapping=self.fermionic_transformation._qubit_mapping,
two_qubit_reduction=self.fermionic_transformation._two_qubit_reduction,
num_time_slices=1,
shallow_circuit_concat=False,
method_doubles='pucc',
excitation_type='d'
)
solver = VQE(var_form=var_form, optimizer=optimizer,
quantum_instance=QuantumInstance(
backend=BasicAer.get_backend('statevector_simulator')))
gsc = GroundStateEigensolver(self.fermionic_transformation, solver)
result = gsc.solve(self.driver)
self.assertAlmostEqual(result.total_energies[0], self.reference_energy_pUCCD, places=6)
def test_tapered_op(self):
""" tapered op test """
optimizer = SLSQP(maxiter=1000)
init_state = HartreeFock(
num_orbitals=self.fermionic_transformation.molecule_info['num_orbitals'],
qubit_mapping=self.fermionic_transformation._qubit_mapping,
two_qubit_reduction=self.fermionic_transformation._two_qubit_reduction,
num_particles=self.fermionic_transformation.molecule_info['num_particles'],
sq_list=self.z2_symmetries.sq_list)
var_form = UCCSD(
num_orbitals=self.fermionic_transformation.molecule_info['num_orbitals'],
num_particles=self.fermionic_transformation.molecule_info['num_particles'],
active_occupied=None,
active_unoccupied=None,
initial_state=init_state,
qubit_mapping=self.fermionic_transformation._qubit_mapping,
two_qubit_reduction=self.fermionic_transformation._two_qubit_reduction,
num_time_slices=1,
z2_symmetries=self.z2_symmetries)
solver = VQE(var_form=var_form, optimizer=optimizer,
quantum_instance=QuantumInstance(
backend=BasicAer.get_backend('statevector_simulator')))
gsc = GroundStateEigensolver(self.fermionic_transformation, solver)
result = gsc.solve(self.driver)
self.assertAlmostEqual(result.total_energies[0], self.reference_energy, places=6)
def setUp(self):
super().setUp()
self.reference_energy = -1.1373060356951838
self.seed = 700
aqua_globals.random_seed = self.seed
self.driver = HDF5Driver(
self.get_resource_path('test_driver_hdf5.hdf5'))
fermionic_transformation = FermionicTransformation(
qubit_mapping=QubitMappingType.PARITY, two_qubit_reduction=False)
self.qubit_op, _ = fermionic_transformation.transform(self.driver)
self.fermionic_transformation = fermionic_transformation
self.optimizer = SLSQP(maxiter=100)
initial_state = HartreeFock(
fermionic_transformation.molecule_info['num_orbitals'],
fermionic_transformation.molecule_info['num_particles'],
qubit_mapping=fermionic_transformation._qubit_mapping,
two_qubit_reduction=fermionic_transformation._two_qubit_reduction)
self.var_form = UCCSD(
num_orbitals=fermionic_transformation.
molecule_info['num_orbitals'],
num_particles=fermionic_transformation.
molecule_info['num_particles'],
initial_state=initial_state,
qubit_mapping=fermionic_transformation._qubit_mapping,
two_qubit_reduction=fermionic_transformation._two_qubit_reduction)
def test_excitation_preserving(self):
"""Test the excitation preserving wavefunction on a chemistry example."""
driver = HDF5Driver(self.get_resource_path('test_driver_hdf5.hdf5'))
fermionic_transformation = FermionicTransformation(
qubit_mapping=QubitMappingType.PARITY, two_qubit_reduction=False)
qubit_op, _ = fermionic_transformation.transform(driver)
optimizer = SLSQP(maxiter=100)
initial_state = HartreeFock(
fermionic_transformation.molecule_info['num_orbitals'],
fermionic_transformation.molecule_info['num_particles'],
qubit_mapping=fermionic_transformation._qubit_mapping,
two_qubit_reduction=fermionic_transformation._two_qubit_reduction)
wavefunction = ExcitationPreserving(qubit_op.num_qubits)
wavefunction.compose(initial_state, front=True, inplace=True)
solver = VQE(var_form=wavefunction,
optimizer=optimizer,
quantum_instance=QuantumInstance(
BasicAer.get_backend('statevector_simulator'),
seed_simulator=aqua_globals.random_seed,
seed_transpiler=aqua_globals.random_seed))
gsc = GroundStateEigensolver(fermionic_transformation, solver)
result = gsc.solve(driver)
self.assertAlmostEqual(result.total_energies[0],
self.reference_energy,
places=4)
def setUp(self):
super().setUp()
# np.random.seed(50)
self.seed = 50
aqua_globals.random_seed = self.seed
try:
driver = PySCFDriver(atom='H .0 .0 .0; H .0 .0 0.735',
unit=UnitsType.ANGSTROM,
basis='sto3g')
except QiskitChemistryError:
self.skipTest('PYSCF driver does not appear to be installed')
return
molecule = driver.run()
self.num_particles = molecule.num_alpha + molecule.num_beta
self.num_spin_orbitals = molecule.num_orbitals * 2
fer_op = FermionicOperator(h1=molecule.one_body_integrals,
h2=molecule.two_body_integrals)
map_type = 'PARITY'
qubit_op = fer_op.mapping(map_type)
self.qubit_op = Z2Symmetries.two_qubit_reduction(
to_weighted_pauli_operator(qubit_op), self.num_particles)
self.num_qubits = self.qubit_op.num_qubits
self.init_state = HartreeFock(self.num_spin_orbitals,
self.num_particles)
self.var_form_base = None
def test_iqpe(self, distance):
""" iqpe test """
self.log.debug('Testing End-to-End with IQPE on H2 with '
'inter-atomic distance %s.', distance)
try:
driver = PySCFDriver(atom='H .0 .0 .0; H .0 .0 {}'.format(distance),
unit=UnitsType.ANGSTROM,
charge=0,
spin=0,
basis='sto3g')
except QiskitChemistryError:
self.skipTest('PYSCF driver does not appear to be installed')
molecule = driver.run()
qubit_mapping = 'parity'
fer_op = FermionicOperator(h1=molecule.one_body_integrals,
h2=molecule.two_body_integrals)
qubit_op = fer_op.mapping(map_type=qubit_mapping, threshold=1e-10)
qubit_op = Z2Symmetries.two_qubit_reduction(qubit_op, 2)
exact_eigensolver = NumPyMinimumEigensolver(qubit_op)
results = exact_eigensolver.run()
reference_energy = results.eigenvalue.real
self.log.debug('The exact ground state energy is: %s', results.eigenvalue.real)
num_particles = molecule.num_alpha + molecule.num_beta
two_qubit_reduction = True
num_orbitals = qubit_op.num_qubits + (2 if two_qubit_reduction else 0)
num_time_slices = 1
num_iterations = 6
state_in = HartreeFock(num_orbitals, num_particles, qubit_mapping, two_qubit_reduction)
iqpe = IQPE(qubit_op, state_in, num_time_slices, num_iterations,
expansion_mode='suzuki', expansion_order=2,
shallow_circuit_concat=True)
backend = qiskit.BasicAer.get_backend('qasm_simulator')
quantum_instance = QuantumInstance(backend, shots=100)
result = iqpe.run(quantum_instance)
self.log.debug('top result str label: %s', result.top_measurement_label)
self.log.debug('top result in decimal: %s', result.top_measurement_decimal)
self.log.debug('stretch: %s', result.stretch)
self.log.debug('translation: %s', result.translation)
self.log.debug('final energy from QPE: %s', result.eigenvalue.real)
self.log.debug('reference energy: %s', reference_energy)
self.log.debug('ref energy (transformed): %s',
(reference_energy + result.translation) * result.stretch)
self.log.debug('ref binary str label: %s', decimal_to_binary(
(reference_energy + result.translation) * result.stretch,
max_num_digits=num_iterations + 3,
fractional_part_only=True
))
np.testing.assert_approx_equal(result.eigenvalue.real, reference_energy, significant=2)
def cb_create_solver(num_particles, num_orbitals, qubit_mapping,
two_qubit_reduction, z2_symmetries):
state_in = HartreeFock(num_orbitals, num_particles, qubit_mapping,
two_qubit_reduction, z2_symmetries.sq_list)
iqpe = IQPE(None,
state_in,
num_time_slices=1,
num_iterations=6,
expansion_mode='suzuki',
expansion_order=2,
shallow_circuit_concat=True)
iqpe.quantum_instance = QuantumInstance(
BasicAer.get_backend('qasm_simulator'), shots=100)
return iqpe
def test_h2_one_qubit_statevector(self):
"""Test H2 with tapering and statevector backend."""
two_qubit_reduction = True
qubit_mapping = 'parity'
warnings.filterwarnings('ignore', category=DeprecationWarning)
core = Hamiltonian(transformation=TransformationType.FULL,
qubit_mapping=QubitMappingType.PARITY,
two_qubit_reduction=two_qubit_reduction,
freeze_core=False,
orbital_reduction=[])
warnings.filterwarnings('always', category=DeprecationWarning)
qubit_op, _ = core.run(self.molecule)
num_orbitals = core.molecule_info['num_orbitals']
num_particles = core.molecule_info['num_particles']
# tapering
z2_symmetries = Z2Symmetries.find_Z2_symmetries(qubit_op)
# know the sector
tapered_op = z2_symmetries.taper(qubit_op)[1]
initial_state = HartreeFock(num_orbitals=num_orbitals,
num_particles=num_particles,
qubit_mapping=qubit_mapping,
two_qubit_reduction=two_qubit_reduction,
sq_list=tapered_op.z2_symmetries.sq_list)
var_form = UCCSD(num_orbitals=num_orbitals,
num_particles=num_particles,
initial_state=initial_state,
qubit_mapping=qubit_mapping,
two_qubit_reduction=two_qubit_reduction,
z2_symmetries=tapered_op.z2_symmetries)
optimizer = SPSA(maxiter=50)
eom_vqe = QEomVQE(tapered_op,
var_form,
optimizer,
num_orbitals=num_orbitals,
num_particles=num_particles,
qubit_mapping=qubit_mapping,
two_qubit_reduction=two_qubit_reduction,
z2_symmetries=tapered_op.z2_symmetries,
untapered_op=qubit_op)
backend = BasicAer.get_backend('statevector_simulator')
quantum_instance = QuantumInstance(backend)
result = eom_vqe.run(quantum_instance)
np.testing.assert_array_almost_equal(self.reference,
result['energies'],
decimal=5)
def test_uccsd_hf_excitations(self):
""" uccsd tapering test using all double excitations """
# initial state
init_state = HartreeFock(
num_orbitals=self.fermionic_transformation.molecule_info['num_orbitals'],
qubit_mapping=self.fermionic_transformation._qubit_mapping,
two_qubit_reduction=self.fermionic_transformation._two_qubit_reduction,
num_particles=self.fermionic_transformation.molecule_info['num_particles'],
sq_list=self.fermionic_transformation.molecule_info['z2_symmetries'].sq_list)
# check singlet excitations
var_form = UCCSD(
num_orbitals=self.fermionic_transformation.molecule_info['num_orbitals'],
num_particles=self.fermionic_transformation.molecule_info['num_particles'],
active_occupied=None, active_unoccupied=None,
initial_state=init_state,
qubit_mapping=self.fermionic_transformation._qubit_mapping,
two_qubit_reduction=self.fermionic_transformation._two_qubit_reduction,
num_time_slices=1,
z2_symmetries=self.fermionic_transformation.molecule_info['z2_symmetries'],
shallow_circuit_concat=False,
method_doubles='succ',
excitation_type='d',
skip_commute_test=True)
double_excitations_singlet = var_form._double_excitations
res = TestUCCSDHartreeFock.excitation_lists_comparator(
double_excitations_singlet, self.reference_singlet_double_excitations)
self.assertEqual(res, True)
# check grouped singlet excitations
var_form = UCCSD(
num_orbitals=self.fermionic_transformation.molecule_info['num_orbitals'],
num_particles=self.fermionic_transformation.molecule_info['num_particles'],
active_occupied=None, active_unoccupied=None,
initial_state=init_state,
qubit_mapping=self.fermionic_transformation._qubit_mapping,
two_qubit_reduction=self.fermionic_transformation._two_qubit_reduction,
num_time_slices=1,
z2_symmetries=self.fermionic_transformation.molecule_info['z2_symmetries'],
shallow_circuit_concat=False,
method_doubles='succ_full',
excitation_type='d',
skip_commute_test=True)
double_excitations_singlet_grouped = var_form._double_excitations_grouped
res_groups = TestUCCSDHartreeFock.group_excitation_lists_comparator(
double_excitations_singlet_grouped, self.reference_singlet_groups)
self.assertEqual(res_groups, True)
def cb_default_solver(num_particles, num_orbitals, qubit_mapping,
two_qubit_reduction, z2_symmetries):
""" Default solver """
initial_state = HartreeFock(num_orbitals, num_particles,
qubit_mapping, two_qubit_reduction,
z2_symmetries.sq_list)
var_form = UCCSD(num_orbitals=num_orbitals,
num_particles=num_particles,
initial_state=initial_state,
qubit_mapping=qubit_mapping,
two_qubit_reduction=two_qubit_reduction,
z2_symmetries=z2_symmetries)
vqe = VQE(var_form=var_form)
vqe.quantum_instance = quantum_instance
return vqe
def cb_create_solver(num_particles, num_orbitals, qubit_mapping,
two_qubit_reduction, z2_symmetries):
initial_state = HartreeFock(num_orbitals, num_particles,
qubit_mapping, two_qubit_reduction,
z2_symmetries.sq_list)
var_form = UCCSD(num_orbitals=num_orbitals,
num_particles=num_particles,
initial_state=initial_state,
qubit_mapping=qubit_mapping,
two_qubit_reduction=two_qubit_reduction,
z2_symmetries=z2_symmetries)
vqe = VQE(var_form=var_form, optimizer=SLSQP(maxiter=500))
vqe.quantum_instance = BasicAer.get_backend(
'statevector_simulator')
return vqe
def test_uccsd_hf_qUCCSD(self):
""" uccsd tapering test using all double excitations """
fermionic_transformation = FermionicTransformation(
transformation=TransformationType.FULL,
qubit_mapping=QubitMappingType.PARITY,
two_qubit_reduction=True,
freeze_core=True,
orbital_reduction=[],
z2symmetry_reduction='auto'
)
qubit_op, _ = fermionic_transformation.transform(self.driver)
# optimizer
optimizer = SLSQP(maxiter=100)
# initial state
init_state = HartreeFock(
num_orbitals=fermionic_transformation.molecule_info['num_orbitals'],
qubit_mapping=fermionic_transformation._qubit_mapping,
two_qubit_reduction=fermionic_transformation._two_qubit_reduction,
num_particles=fermionic_transformation.molecule_info['num_particles'],
sq_list=fermionic_transformation.molecule_info['z2_symmetries'].sq_list)
var_form = UCCSD(
num_orbitals=fermionic_transformation.molecule_info['num_orbitals'],
num_particles=fermionic_transformation.molecule_info['num_particles'],
active_occupied=None, active_unoccupied=None,
initial_state=init_state,
qubit_mapping=fermionic_transformation._qubit_mapping,
two_qubit_reduction=fermionic_transformation._two_qubit_reduction,
num_time_slices=1,
z2_symmetries=fermionic_transformation.molecule_info['z2_symmetries'],
shallow_circuit_concat=False,
method_doubles='ucc',
excitation_type='sd',
skip_commute_test=True)
solver = VQE(var_form=var_form, optimizer=optimizer,
quantum_instance=QuantumInstance(
backend=BasicAer.get_backend('statevector_simulator')))
raw_result = solver.compute_minimum_eigenvalue(qubit_op, None)
result = fermionic_transformation.interpret(raw_result)
self.assertAlmostEqual(result.total_energies[0], self.reference_energy_UCCSD, places=6)
def get_solver(self, transformation):
num_orbitals = transformation.molecule_info['num_orbitals']
num_particles = transformation.molecule_info['num_particles']
qubit_mapping = transformation.qubit_mapping
two_qubit_reduction = transformation.molecule_info['two_qubit_reduction']
z2_symmetries = transformation.molecule_info['z2_symmetries']
initial_state = HartreeFock(num_orbitals, num_particles, qubit_mapping,
two_qubit_reduction, z2_symmetries.sq_list)
var_form = UCCSD(num_orbitals=num_orbitals,
num_particles=num_particles,
initial_state=initial_state,
qubit_mapping=qubit_mapping,
two_qubit_reduction=two_qubit_reduction,
z2_symmetries=z2_symmetries)
vqe = VQE(var_form=var_form, quantum_instance=self._quantum_instance,
optimizer=L_BFGS_B())
return vqe
def test_h2_two_qubits_statevector(self):
"""Test H2 with parity mapping and statevector backend."""
two_qubit_reduction = True
qubit_mapping = 'parity'
warnings.filterwarnings('ignore', category=DeprecationWarning)
core = Hamiltonian(transformation=TransformationType.FULL,
qubit_mapping=QubitMappingType.PARITY,
two_qubit_reduction=two_qubit_reduction,
freeze_core=False,
orbital_reduction=[])
warnings.filterwarnings('always', category=DeprecationWarning)
qubit_op, _ = core.run(self.molecule)
num_orbitals = core.molecule_info['num_orbitals']
num_particles = core.molecule_info['num_particles']
initial_state = HartreeFock(num_orbitals=num_orbitals,
num_particles=num_particles,
qubit_mapping=qubit_mapping,
two_qubit_reduction=two_qubit_reduction)
var_form = UCCSD(num_orbitals=num_orbitals,
num_particles=num_particles,
initial_state=initial_state,
qubit_mapping=qubit_mapping,
two_qubit_reduction=two_qubit_reduction)
optimizer = COBYLA(maxiter=1000, tol=1e-8)
eom_vqe = QEomVQE(qubit_op,
var_form,
optimizer,
num_orbitals=num_orbitals,
num_particles=num_particles,
qubit_mapping=qubit_mapping,
two_qubit_reduction=two_qubit_reduction)
backend = BasicAer.get_backend('statevector_simulator')
quantum_instance = QuantumInstance(backend)
result = eom_vqe.run(quantum_instance)
np.testing.assert_array_almost_equal(self.reference,
result['energies'],
decimal=4)
def test_readme_sample(self):
""" readme sample test """
# pylint: disable=import-outside-toplevel,redefined-builtin
def print(*args):
""" overloads print to log values """
if args:
self.log.debug(args[0], *args[1:])
# --- Exact copy of sample code ----------------------------------------
from qiskit.chemistry import FermionicOperator
from qiskit.chemistry.drivers import PySCFDriver, UnitsType
from qiskit.aqua.operators import Z2Symmetries
# Use PySCF, a classical computational chemistry software
# package, to compute the one-body and two-body integrals in
# molecular-orbital basis, necessary to form the Fermionic operator
driver = PySCFDriver(atom='H .0 .0 .0; H .0 .0 0.735',
unit=UnitsType.ANGSTROM,
basis='sto3g')
molecule = driver.run()
num_particles = molecule.num_alpha + molecule.num_beta
num_spin_orbitals = molecule.num_orbitals * 2
# Build the qubit operator, which is the input to the VQE algorithm in Aqua
ferm_op = FermionicOperator(h1=molecule.one_body_integrals,
h2=molecule.two_body_integrals)
map_type = 'PARITY'
qubit_op = ferm_op.mapping(map_type)
qubit_op = Z2Symmetries.two_qubit_reduction(qubit_op, num_particles)
num_qubits = qubit_op.num_qubits
# setup a classical optimizer for VQE
from qiskit.aqua.components.optimizers import L_BFGS_B
optimizer = L_BFGS_B()
# setup the initial state for the variational form
from qiskit.chemistry.circuit.library import HartreeFock
init_state = HartreeFock(num_spin_orbitals, num_particles)
# setup the variational form for VQE
from qiskit.circuit.library import TwoLocal
var_form = TwoLocal(num_qubits, ['ry', 'rz'], 'cz')
# add the initial state
var_form.compose(init_state, front=True)
# setup and run VQE
from qiskit.aqua.algorithms import VQE
algorithm = VQE(qubit_op, var_form, optimizer)
# set the backend for the quantum computation
from qiskit import Aer
backend = Aer.get_backend('statevector_simulator')
result = algorithm.run(backend)
print(result.eigenvalue.real)
# ----------------------------------------------------------------------
self.assertAlmostEqual(result.eigenvalue.real,
-1.8572750301938803,
places=6)
def test_qubits_4_jw_h2(self):
""" qubits 4 jw h2 test """
state = HartreeFock(4, (1, 1), 'jordan_wigner', False)
ref = QuantumCircuit(4)
ref.x([0, 2])
self.assertEqual(state, ref)
def test_qubits_4_py_h2(self):
""" qubits 4 py h2 test """
state = HartreeFock(4, (1, 1), 'parity', False)
ref = QuantumCircuit(4)
ref.x([0, 1])
self.assertEqual(state, ref)
def test_qubits_4_bk_h2(self):
""" qubits 4 bk h2 test """
state = HartreeFock(4, (1, 1), 'bravyi_kitaev', False)
ref = QuantumCircuit(4)
ref.x([0, 1, 2])
self.assertEqual(state, ref)
def test_h2_bopes_sampler(self):
"""Test BOPES Sampler on H2"""
seed = 50
aqua_globals.random_seed = seed
# Molecule
dof = partial(Molecule.absolute_distance, atom_pair=(1, 0))
m = Molecule(geometry=[['H', [0., 0., 1.]], ['H', [0., 0.45, 1.]]],
degrees_of_freedom=[dof])
f_t = FermionicTransformation()
driver = PySCFDriver(molecule=m)
qubitop, _ = f_t.transform(driver)
# Quantum Instance:
shots = 1
backend = 'statevector_simulator'
quantum_instance = QuantumInstance(BasicAer.get_backend(backend),
shots=shots)
quantum_instance.run_config.seed_simulator = seed
quantum_instance.compile_config['seed_transpiler'] = seed
# Variational form
i_state = HartreeFock(
num_orbitals=f_t._molecule_info['num_orbitals'],
qubit_mapping=f_t._qubit_mapping,
two_qubit_reduction=f_t._two_qubit_reduction,
num_particles=f_t._molecule_info['num_particles'],
sq_list=f_t._molecule_info['z2_symmetries'].sq_list)
var_form = RealAmplitudes(qubitop.num_qubits,
reps=1,
entanglement='full',
skip_unentangled_qubits=False)
var_form.compose(i_state, front=True)
# Classical optimizer:
# Analytic Quantum Gradient Descent (AQGD) (with Epochs)
aqgd_max_iter = [10] + [1] * 100
aqgd_eta = [1e0] + [1.0 / k for k in range(1, 101)]
aqgd_momentum = [0.5] + [0.5] * 100
optimizer = AQGD(maxiter=aqgd_max_iter,
eta=aqgd_eta,
momentum=aqgd_momentum,
tol=1e-6,
averaging=4)
# Min Eigensolver: VQE
solver = VQE(var_form=var_form,
optimizer=optimizer,
quantum_instance=quantum_instance,
expectation=PauliExpectation())
me_gss = GroundStateEigensolver(f_t, solver)
# BOPES sampler
sampler = BOPESSampler(gss=me_gss)
# absolute internuclear distance in Angstrom
points = [0.7, 1.0, 1.3]
results = sampler.sample(driver, points)
points_run = results.points
energies = results.energies
np.testing.assert_array_almost_equal(points_run, [0.7, 1.0, 1.3])
np.testing.assert_array_almost_equal(
energies, [-1.13618945, -1.10115033, -1.03518627], decimal=2)
def test_qubits_6_py_lih(self):
""" qubits 6 py lih test """
state = HartreeFock(10, (1, 1), 'parity', True, [1, 2])
ref = QuantumCircuit(6)
ref.x([0, 1])
self.assertEqual(state, ref)
def test_qubits_2_py_h2(self):
""" qubits 2 py h2 test """
state = HartreeFock(4, 2, 'parity', True)
ref = QuantumCircuit(2)
ref.x(0)
self.assertEqual(state, ref)