class StopRunRetry(QWidget):
def __init__(self, parent=None):
super(StopRunRetry, self).__init__()
main_path = get_main_path()
ctrl_box = QHBoxLayout()
self.repeat_btn = QPushButton("\n Retry \n", self)
re_try_icon_path = str(main_path + "/resources/re_try.png")
re_try_grayed_path = str(main_path + "/resources/re_try_grayed.png")
tmp_ico = QIcon()
tmp_ico.addFile(re_try_icon_path, mode=QIcon.Normal)
tmp_ico.addFile(re_try_grayed_path, mode=QIcon.Disabled)
self.repeat_btn.setIcon(tmp_ico)
self.repeat_btn.setIconSize(QSize(50, 38))
ctrl_box.addWidget(self.repeat_btn)
self.run_btn = QPushButton("\n Run \n", self)
self.dials_logo_path = str(
main_path + "/resources/DIALS_Logo_smaller_centred.png"
)
dials_grayed_path = str(
main_path + "/resources/DIALS_Logo_smaller_centred_grayed.png"
)
tmp_ico = QIcon()
tmp_ico.addFile(self.dials_logo_path, mode=QIcon.Normal)
tmp_ico.addFile(dials_grayed_path, mode=QIcon.Disabled)
self.run_btn.setIcon(tmp_ico)
self.run_btn.setIconSize(QSize(50, 50))
ctrl_box.addWidget(self.run_btn)
self.stop_btn = QPushButton("\n Stop \n", self)
stop_logo_path = str(main_path + "/resources/stop.png")
stop_grayed_path = str(main_path + "/resources/stop_grayed.png")
tmp_ico = QIcon()
tmp_ico.addFile(stop_logo_path, mode=QIcon.Normal)
tmp_ico.addFile(stop_grayed_path, mode=QIcon.Disabled)
self.stop_btn.setIcon(tmp_ico)
self.stop_btn.setIconSize(QSize(50, 38))
ctrl_box.addWidget(self.stop_btn)
self.setLayout(ctrl_box)
class ImportPage(QWidget):
update_command_lst_low_level = Signal(list)
"""
This stacked widget basically helps the user to browse the input images
path, there is no auto-generated GUI form Phil parameters in use withing
this widget.
"""
def __init__(self, parent=None):
super(ImportPage, self).__init__(parent=None)
main_v_box = QVBoxLayout()
label_font = QFont()
sys_font_point_size = label_font.pointSize()
label_font.setPointSize(sys_font_point_size + 2)
step_label = QLabel(str("Import"))
step_label.setFont(label_font)
self.simple_lin = QLineEdit(self)
self.simple_lin.textChanged.connect(self.update_command)
self.x_spn_bx = QSpinBox()
self.x_spn_bx.setMaximum(99999)
self.x_spn_bx.setSpecialValueText(" ")
self.y_spn_bx = QSpinBox()
self.y_spn_bx.setMaximum(99999)
self.y_spn_bx.setSpecialValueText(" ")
self.x_spn_bx.valueChanged.connect(self.x_beam_changed)
self.y_spn_bx.valueChanged.connect(self.y_beam_changed)
self.chk_invert = QCheckBox("Invert rotation axis")
self.chk_invert.stateChanged.connect(self.inv_rota_changed)
self.opn_fil_btn = QPushButton(" \n Select file(s) \n ")
main_path = get_main_path()
self.opn_fil_btn.setIcon(QIcon(main_path + "/resources/import.png"))
self.opn_fil_btn.setIconSize(QSize(80, 48))
main_v_box.addWidget(step_label)
main_v_box.addWidget(self.opn_fil_btn)
main_v_box.addWidget(self.simple_lin)
self.b_cetre_label = QLabel("\n\n Beam centre")
main_v_box.addWidget(self.b_cetre_label)
cent_hbox = QHBoxLayout()
self.x_label = QLabel(" X: ")
cent_hbox.addWidget(self.x_label)
cent_hbox.addWidget(self.x_spn_bx)
self.y_label = QLabel(" Y: ")
cent_hbox.addWidget(self.y_label)
cent_hbox.addWidget(self.y_spn_bx)
# cent_hbox.addWidget(QLabel(" \n "))
cent_hbox.addStretch()
main_v_box.addLayout(cent_hbox)
main_v_box.addWidget(self.chk_invert)
main_v_box.addStretch()
self.opn_fil_btn.clicked.connect(self.open_files)
self.defa_dir = str(os.getcwd())
self.setLayout(main_v_box)
# self.show()
self.reset_par()
def reset_par(self):
logger.info("reset_par(ImportPage)")
self.cmd_list = []
self.simple_lin.setText(" ? ")
self.x_spn_bx.setValue(0.0)
self.y_spn_bx.setValue(0.0)
self.chk_invert.setChecked(False)
self.x_beam, self.y_beam = 0.0, 0.0
self.path_file_str = ""
self.second_half = ""
self.third_half = ""
def update_param_w_lst(self, lst_in):
self.reset_par()
logger.info("update_param_w_lst(ImportPage) \n lst: \n", lst_in)
for singl_com in lst_in:
if singl_com[0:1] == "/":
self.path_file_str = str(singl_com)
self.put_str_lin()
if singl_com[0:12] == "image_range=":
self.path_file_str += " "
self.path_file_str += str(singl_com)
self.put_str_lin()
if singl_com == "invert_rotation_axis=True":
self.chk_invert.setChecked(True)
if singl_com[0:22] == "slow_fast_beam_centre=":
yb_xb_str = singl_com[22:]
yb_str, xb_str = yb_xb_str.split(",")
yb = float(yb_str)
xb = float(xb_str)
self.y_spn_bx.setValue(yb)
self.x_spn_bx.setValue(xb)
def inv_rota_changed(self):
if self.chk_invert.checkState():
self.third_half = "invert_rotation_axis=True"
else:
self.third_half = ""
self.put_str_lin()
def x_beam_changed(self, value):
self.x_beam = value
self.build_second_half()
def y_beam_changed(self, value):
self.y_beam = value
self.build_second_half()
def build_second_half(self):
if self.x_beam != 0.0 and self.y_beam != 0.0:
self.second_half = (
"slow_fast_beam_centre=" + str(self.y_beam) + "," + str(self.x_beam)
)
else:
self.second_half = ""
self.put_str_lin()
def open_files(self):
lst_file_path = QFileDialog.getOpenFileNames(
self, "Open File(s)", self.defa_dir, "All Files (*.*)"
)
if len(lst_file_path) > 0:
new_dir, new_command = get_import_run_string(lst_file_path)
# logger.info("\n new_dir=", new_dir, ">>")
# logger.info("\n new_command =", new_command, ">>")
self.path_file_str = new_command
self.defa_dir = new_dir
self.put_str_lin()
def put_str_lin(self):
# logger.info("self.path_file_str =", self.path_file_str, ">>")
self.cmd_list = [
self.path_file_str,
self.second_half.lstrip(),
self.third_half.lstrip(),
]
txt_lin = " ".join(self.cmd_list).rstrip()
while " " in txt_lin:
txt_lin = txt_lin.replace(" ", " ")
self.simple_lin.setText(txt_lin)
def set_arg_obj(self, sys_arg_in):
"""Pass the system argument object to handle launch arguments."""
if sys_arg_in.template is not None:
str_arg = str(sys_arg_in.template)
self.simple_lin.setText(str_arg)
def update_command(self):
self.command_lst = [["import"]]
param_com = str(self.simple_lin.text())
cmd_lst = param_com.split(" ")
for single_com in cmd_lst:
self.command_lst[0].append(single_com)
self.update_command_lst_low_level.emit(self.command_lst[0])
def gray_me_out(self):
self.simple_lin.setEnabled(False)
self.opn_fil_btn.setEnabled(False)
self.x_spn_bx.setEnabled(False)
self.y_spn_bx.setEnabled(False)
self.x_label.setEnabled(False)
self.y_label.setEnabled(False)
self.b_cetre_label.setEnabled(False)
self.chk_invert.setEnabled(False)
def activate_me(self, cur_nod=None):
self.simple_lin.setEnabled(True)
self.opn_fil_btn.setEnabled(True)
self.y_spn_bx.setEnabled(True)
self.x_spn_bx.setEnabled(True)
self.x_label.setEnabled(True)
self.y_label.setEnabled(True)
self.b_cetre_label.setEnabled(True)
self.chk_invert.setEnabled(True)
class ProstateTRUSNavUltrasound(UltraSound):
OFFLINE_VOLUME_FILENAME = "RecVol_Reference.mha"
SCOUT_VOLUME_FILENAME = "ScoutScan.mha"
LIVE_VOLUME_FILENAME = "LiveReconstructedVolume.mha"
RECORDING_FILENAME = "Recording.mha"
SCOUT_RECORDING_FILENAME = "ScoutScanRecording.mha"
LIVE_RECORDING_FILENAME = LIVE_VOLUME_FILENAME
SCOUT_VOLUME_NODE_NAME = "ScoutScan"
OFFLINE_VOLUME_NODE_NAME = "RecVol_Reference"
LIVE_VOLUME_NODE_NAME = "liveReconstruction"
APPLY_HOLE_FILLING_FOR_SNAPSHOT = False
SNAPSHOT_INTERVAL = 3
OUTPUT_VOLUME_SPACING = 3
LIVE_OUTPUT_VOLUME_SPACING = 1
@property
def roiNode(self):
return self._roiNode
@roiNode.setter
def roiNode(self, node):
self._roiNode = node
if node is not None:
self.startStopLiveReconstructionButton.setEnabled(True)
else:
self.startStopLiveReconstructionButton.setEnabled(False)
def __init__(self, guideletParent):
UltraSound.__init__(self, guideletParent)
self.parameterNode = guideletParent.parameterNode
self.parameterNodeObserver = None
self._roiNode = None
self.liveOutputSpacingValue = [
self.LIVE_OUTPUT_VOLUME_SPACING, self.LIVE_OUTPUT_VOLUME_SPACING,
self.LIVE_OUTPUT_VOLUME_SPACING
]
self.outputSpacing = [
self.OUTPUT_VOLUME_SPACING, self.OUTPUT_VOLUME_SPACING,
self.OUTPUT_VOLUME_SPACING
]
self.roiOrigin = None
self.roiExtent = None
self.defaultParameterNode = None
self.logic = ProstateTRUSNavUltrasoundLogic()
def setupPanel(self, parentWidget):
logging.debug('ProstateTRUSNavUltrasound.setupPanel')
self.connectorNode = self.guideletParent.connectorNode
self.connectorNodeConnected = False
collapsibleButton = ctkCollapsibleButton()
collapsibleButton.setProperty('collapsedHeight', 20)
setButtonStyle(collapsibleButton, 2.0)
collapsibleButton.text = "Ultrasound"
parentWidget.addWidget(collapsibleButton)
ultrasoundLayout = QFormLayout(collapsibleButton)
ultrasoundLayout.setContentsMargins(12, 4, 4, 4)
ultrasoundLayout.setSpacing(4)
self.connectDisconnectButton = QPushButton("Connect")
self.connectDisconnectButton.setToolTip(
"If clicked, connection OpenIGTLink")
hbox = QHBoxLayout()
hbox.addWidget(self.connectDisconnectButton)
ultrasoundLayout.addRow(hbox)
self.setupIcons()
self.captureIDSelector = QComboBox()
self.captureIDSelector.setToolTip("Pick capture device ID")
self.captureIDSelector.setSizePolicy(QSizePolicy.Expanding,
QSizePolicy.Expanding)
self.volumeReconstructorIDSelector = QComboBox()
self.volumeReconstructorIDSelector.setToolTip(
"Pick volume reconstructor device ID")
self.volumeReconstructorIDSelector.setSizePolicy(
QSizePolicy.Expanding, QSizePolicy.Expanding)
self.startStopRecordingButton = QPushButton(" Start Recording")
self.startStopRecordingButton.setCheckable(True)
self.startStopRecordingButton.setIcon(self.recordIcon)
self.startStopRecordingButton.setEnabled(False)
self.startStopRecordingButton.setToolTip("If clicked, start recording")
self.startStopRecordingButton.setSizePolicy(QSizePolicy.Expanding,
QSizePolicy.Expanding)
recordParametersControlsLayout = QGridLayout()
self.filenameLabel = self.createLabel("Filename:", visible=False)
recordParametersControlsLayout.addWidget(self.filenameLabel, 1, 0)
# Offline Reconstruction
self.offlineReconstructButton = QPushButton(" Offline Reconstruction")
self.offlineReconstructButton.setCheckable(True)
self.offlineReconstructButton.setIcon(self.recordIcon)
self.offlineReconstructButton.setEnabled(False)
self.offlineReconstructButton.setToolTip(
"If clicked, reconstruct recorded volume")
self.offlineReconstructButton.setSizePolicy(QSizePolicy.Expanding,
QSizePolicy.Expanding)
self.offlineVolumeToReconstructSelector = QComboBox()
self.offlineVolumeToReconstructSelector.setEditable(True)
self.offlineVolumeToReconstructSelector.setToolTip(
"Pick/set volume to reconstruct")
self.offlineVolumeToReconstructSelector.visible = False
hbox = QHBoxLayout()
hbox.addWidget(self.startStopRecordingButton)
hbox.addWidget(self.offlineReconstructButton)
ultrasoundLayout.addRow(hbox)
# Scout scan (record and low resolution reconstruction) and live reconstruction
# Scout scan part
self.startStopScoutScanButton = QPushButton(
" Scout scan\n Start recording")
self.startStopScoutScanButton.setCheckable(True)
self.startStopScoutScanButton.setIcon(self.recordIcon)
self.startStopScoutScanButton.setToolTip("If clicked, start recording")
self.startStopScoutScanButton.setEnabled(False)
self.startStopScoutScanButton.setSizePolicy(QSizePolicy.Expanding,
QSizePolicy.Expanding)
self.startStopLiveReconstructionButton = QPushButton(
" Start live reconstruction")
self.startStopLiveReconstructionButton.setCheckable(True)
self.startStopLiveReconstructionButton.setIcon(self.recordIcon)
self.startStopLiveReconstructionButton.setToolTip(
"If clicked, start live reconstruction")
self.startStopLiveReconstructionButton.setEnabled(False)
self.startStopLiveReconstructionButton.setSizePolicy(
QSizePolicy.Expanding, QSizePolicy.Expanding)
self.displayRoiButton = QToolButton()
self.displayRoiButton.setCheckable(True)
self.displayRoiButton.setIcon(self.visibleOffIcon)
self.displayRoiButton.setToolTip("If clicked, display ROI")
hbox = QHBoxLayout()
hbox.addWidget(self.startStopScoutScanButton)
hbox.addWidget(self.startStopLiveReconstructionButton)
# hbox.addWidget(self.displayRoiButton)
ultrasoundLayout.addRow(hbox)
self.snapshotTimer = QTimer()
self.snapshotTimer.setSingleShot(True)
self.onParameterSetSelected()
return collapsibleButton
def setupResliceDriver(self):
layoutManager = slicer.app.layoutManager()
# Show ultrasound in red view.
redSlice = layoutManager.sliceWidget('Red')
redSliceLogic = redSlice.sliceLogic()
redSliceLogic.GetSliceCompositeNode().SetBackgroundVolumeID(
self.liveUltrasoundNode_Reference.GetID())
resliceLogic = slicer.modules.volumereslicedriver.logic()
if resliceLogic:
redNode = slicer.util.getNode('vtkMRMLSliceNodeRed')
redNode.SetSliceResolutionMode(
slicer.vtkMRMLSliceNode.SliceResolutionMatchVolumes)
resliceLogic.SetDriverForSlice(
self.liveUltrasoundNode_Reference.GetID(), redNode)
resliceLogic.SetModeForSlice(
6, redNode) # Transverse mode, default for PLUS ultrasound.
else:
logging.warning('Logic not found for Volume Reslice Driver')
def createCollapsibleButton(self, text, collapsed=False):
collapsibleButton = ctkCollapsibleButton()
collapsibleButton.text = text
collapsibleButton.collapsed = collapsed
return collapsibleButton
def createLabel(self, text, visible=True):
label = QLabel()
label.setText(text)
label.visible = visible
return label
def setupConnections(self):
self.startStopRecordingButton.connect(
'clicked(bool)', self.onStartStopRecordingButtonClicked)
self.offlineReconstructButton.connect('clicked(bool)',
self.onReconstVolume)
self.startStopScoutScanButton.connect(
'clicked(bool)', self.onStartStopScoutScanButtonClicked)
self.startStopLiveReconstructionButton.connect(
'clicked(bool)', self.onStartStopLiveReconstructionButtonClicked)
self.displayRoiButton.connect('clicked(bool)',
self.onDisplayRoiButtonClicked)
self.captureIDSelector.connect('currentIndexChanged(QString)',
self.updateParameterNodeFromGui)
self.volumeReconstructorIDSelector.connect(
'currentIndexChanged(QString)', self.updateParameterNodeFromGui)
self.offlineVolumeToReconstructSelector.connect(
'currentIndexChanged(int)', self.updateParameterNodeFromGui)
self.displayRoiButton.connect('clicked(bool)',
self.updateParameterNodeFromGui)
self.snapshotTimer.timeout.connect(
self.onRequestVolumeReconstructionSnapshot)
self.connectDisconnectButton.connect(
'clicked(bool)', self.onConnectDisconnectButtonClicked)
def disconnect(self):
self.startStopRecordingButton.disconnect(
'clicked(bool)', self.onStartStopRecordingButtonClicked)
self.offlineReconstructButton.disconnect('clicked(bool)',
self.onReconstVolume)
self.startStopScoutScanButton.disconnect(
'clicked(bool)', self.onStartStopScoutScanButtonClicked)
self.startStopLiveReconstructionButton.disconnect(
'clicked(bool)', self.onStartStopLiveReconstructionButtonClicked)
self.displayRoiButton.disconnect('clicked(bool)',
self.onDisplayRoiButtonClicked)
self.captureIDSelector.disconnect('currentIndexChanged(QString)',
self.updateParameterNodeFromGui)
self.volumeReconstructorIDSelector.disconnect(
'currentIndexChanged(QString)', self.updateParameterNodeFromGui)
self.offlineVolumeToReconstructSelector.disconnect(
'currentIndexChanged(int)', self.updateParameterNodeFromGui)
self.displayRoiButton.disconnect('clicked(bool)',
self.updateParameterNodeFromGui)
self.snapshotTimer.timeout.disconnect(
self.onRequestVolumeReconstructionSnapshot)
self.connectDisconnectButton.disconnect(
'clicked(bool)', self.onConnectDisconnectButtonClicked)
def setupIcons(self):
self.plusRemoteModuleDirectoryPath = slicer.modules.plusremote.path.replace(
"PlusRemote.py", "")
self.recordIcon = QIcon(self.plusRemoteModuleDirectoryPath +
'/Resources/Icons/icon_Record.png')
self.stopIcon = QIcon(self.plusRemoteModuleDirectoryPath +
'/Resources/Icons/icon_Stop.png')
self.waitIcon = QIcon(self.plusRemoteModuleDirectoryPath +
'/Resources/Icons/icon_Wait.png')
self.visibleOffIcon = QIcon(":Icons\VisibleOff.png")
self.visibleOnIcon = QIcon(":Icons\VisibleOn.png")
def onParameterSetSelected(self):
# Set up default values for new nodes
if self.parameterNode:
self.plusRemoteLogic.setDefaultParameters(self.parameterNode)
self.updateGuiFromParameterNode()
def updateGuiFromParameterNode(self):
self.parameterVolumeList = {
'OfflineVolumeToReconstruct':
self.offlineVolumeToReconstructSelector
}
for parameter in self.parameterVolumeList:
if self.parameterNode.GetParameter(parameter):
self.parameterVolumeList[parameter].blockSignals(True)
self.parameterVolumeList[parameter].blockSignals(False)
if self.parameterNode.GetParameter('CaptureID'):
self.captureIDSelector.blockSignals(True)
for i in range(0, self.captureIDSelector.count):
if self.parameterNode.GetParameter(
'CaptureID') == self.captureIDSelector.itemText(i):
self.captureIDSelector.setCurrentIndex(
int(self.parameterNode.GetParameter('CaptureIdIndex')))
self.captureIDSelector.blockSignals(False)
if self.parameterNode.GetParameter('VolumeReconstructor'):
self.volumeReconstructorIDSelector.blockSignals(True)
for i in range(0, self.volumeReconstructorIDSelector.count):
if self.parameterNode.GetParameter(
'VolumeReconstructor'
) == self.volumeReconstructorIDSelector.itemText(i):
self.volumeReconstructorIDSelector.setCurrentIndex(
int(
self.parameterNode.GetParameter(
'VolumeReconstructorIndex')))
self.volumeReconstructorIDSelector.blockSignals(False)
self.roiNode = self.parameterNode.GetNthNodeReference('ROI', 0)
def updateParameterNodeFromGui(self):
#Update parameter node value to save when user change value in the interface
if not self.parameterNode:
return
self.parametersList = {
'CaptureID':
self.captureIDSelector.currentText,
'CaptureIdIndex':
self.captureIDSelector.currentIndex,
'VolumeReconstructor':
self.volumeReconstructorIDSelector.currentText,
'VolumeReconstructorIndex':
self.volumeReconstructorIDSelector.currentIndex,
'OfflineVolumeToReconstruct':
self.offlineVolumeToReconstructSelector.currentIndex
}
for parameter in self.parametersList:
self.parameterNode.SetParameter(
parameter, str(self.parametersList[parameter]))
if self.roiNode:
roiNodeID = self.roiNode.GetID()
self.parameterNode.SetNthNodeReferenceID('ROI', 0, roiNodeID)
#
# Connector observation and actions
#
def onConnectorNodeConnected(self):
logging.debug("ProstateTrusUltrasound:onConnectorNodeConnected")
self.connectorNodeConnected = True
self.captureIDSelector.setDisabled(False)
self.volumeReconstructorIDSelector.setDisabled(False)
self.plusRemoteLogic.getCaptureDeviceIds(
self.connectorNode.GetID(),
self.onGetCaptureDeviceCommandResponseReceived)
self.plusRemoteLogic.getVolumeReconstructorDeviceIds(
self.connectorNode.GetID(),
self.onGetVolumeReconstructorDeviceCommandResponseReceived)
self.connectDisconnectButton.setText("Disconnect")
def onConnectorNodeDisconnected(self):
logging.debug("ProstateTrusUltrasound:onConnectorNodeDisconnected")
self.connectorNodeConnected = False
self.startStopRecordingButton.setEnabled(False)
self.startStopScoutScanButton.setEnabled(False)
self.startStopLiveReconstructionButton.setEnabled(False)
self.offlineReconstructButton.setEnabled(False)
self.captureIDSelector.setDisabled(True)
self.volumeReconstructorIDSelector.setDisabled(True)
self.connectDisconnectButton.setText("Connect")
def getLiveVolumeRecNode(self):
liveVolumeRecNode = slicer.util.getNode(self.LIVE_VOLUME_NODE_NAME)
return liveVolumeRecNode
def getOfflineVolumeRecNode(self):
offlineVolumeRecNode = slicer.util.getNode(
self.OFFLINE_VOLUME_NODE_NAME)
return offlineVolumeRecNode
def getScoutVolumeNode(self):
scoutScanVolumeNode = slicer.util.getNode(self.SCOUT_VOLUME_NODE_NAME)
return scoutScanVolumeNode
def onConnectDisconnectButtonClicked(self):
if self.connectorNode.GetState(
) == slicer.vtkMRMLIGTLConnectorNode.STATE_CONNECTED:
self.connectorNode.Stop()
else:
self.connectorNode.Start()
def onStartStopRecordingButtonClicked(self):
if self.startStopRecordingButton.isChecked():
self.startStopRecordingButton.setText(" Stop Recording")
self.startStopRecordingButton.setIcon(self.stopIcon)
self.startStopRecordingButton.setToolTip(
"If clicked, stop recording")
self.onStartRecording(self.generateRecordingOutputFilename())
else:
self.startStopRecordingButton.setText(" Start Recording")
self.startStopRecordingButton.setIcon(self.recordIcon)
self.startStopRecordingButton.setToolTip(
"If clicked, start recording")
self.onStopRecording(self.onVolumeRecorded)
def onStartStopScoutScanButtonClicked(self):
if self.startStopScoutScanButton.isChecked():
self.startStopScoutScanButton.setText(
" Scout Scan\n Stop Recording and Reconstruct Recorded Volume"
)
self.startStopScoutScanButton.setIcon(self.stopIcon)
self.startStopScoutScanButton.setToolTip(
"If clicked, stop recording and reconstruct recorded volume")
self.onStartRecording(self.generateScoutRecordingOutputFilename())
else:
self.onStopRecording(self.onScoutVolumeRecorded)
def onStartStopLiveReconstructionButtonClicked(self):
if self.startStopLiveReconstructionButton.isChecked():
if self.roiNode:
self.roiOrigin, self.roiExtent = self.logic.updateVolumeOriginAndExtentFromROI(
self.LIVE_OUTPUT_VOLUME_SPACING, self.roiNode)
self.startStopLiveReconstructionButton.setText(
" Stop Live Reconstruction")
self.startStopLiveReconstructionButton.setIcon(self.stopIcon)
self.startStopLiveReconstructionButton.setToolTip(
"If clicked, stop live reconstruction")
self.onStartRecording(self.getLiveRecordingOutputFilename())
self.onStartReconstruction()
else:
self.startStopLiveReconstructionButton.setText(
" Start Live Reconstruction")
self.startStopLiveReconstructionButton.setIcon(self.recordIcon)
self.startStopLiveReconstructionButton.setToolTip(
"If clicked, start live reconstruction")
self.onStopRecording(self.printCommandResponse)
self.onStopReconstruction()
def onDisplayRoiButtonClicked(self):
if self.displayRoiButton.isChecked():
self.displayRoiButton.setIcon(self.visibleOnIcon)
self.displayRoiButton.setToolTip("If clicked, hide ROI")
if self.roiNode:
self.roiNode.SetDisplayVisibility(1)
else:
self.displayRoiButton.setIcon(self.visibleOffIcon)
self.displayRoiButton.setToolTip("If clicked, display ROI")
if self.roiNode:
self.roiNode.SetDisplayVisibility(0)
def generateRecordingOutputFilename(self):
return self.plusRemoteLogic.addTimestampToFilename(
self.RECORDING_FILENAME)
def generateScoutRecordingOutputFilename(self):
return self.plusRemoteLogic.addTimestampToFilename(
self.SCOUT_RECORDING_FILENAME)
def getLiveRecordingOutputFilename(self):
return self.plusRemoteLogic.addTimestampToFilename(
self.LIVE_RECORDING_FILENAME)
def getLiveReconstructionOutputFilename(self):
return self.plusRemoteLogic.addTimestampToFilename(
self.LIVE_VOLUME_FILENAME)
def onStartRecording(self, filename):
self.plusRemoteLogic.startRecording(self.connectorNode.GetID(),
self.captureIDSelector.currentText,
filename,
self.printCommandResponse)
def onStopRecording(self, callback):
self.plusRemoteLogic.stopRecording(self.connectorNode.GetID(),
self.captureIDSelector.currentText,
callback)
def onStartReconstruction(self):
if self.roiNode:
self.roiOrigin, self.roiExtent = self.logic.updateVolumeOriginAndExtentFromROI(
self.LIVE_OUTPUT_VOLUME_SPACING, self.roiNode)
self.plusRemoteLogic.startVolumeReconstuction(
self.connectorNode.GetID(),
self.volumeReconstructorIDSelector.currentText,
self.liveOutputSpacingValue, self.roiOrigin, self.roiExtent,
self.printCommandResponse,
self.getLiveReconstructionOutputFilename(),
self.LIVE_VOLUME_NODE_NAME)
# Set up timer for requesting snapshot
self.snapshotTimer.start(self.SNAPSHOT_INTERVAL * 1000)
def onStopReconstruction(self):
self.snapshotTimer.stop()
self.plusRemoteLogic.stopVolumeReconstruction(
self.connectorNode.GetID(),
self.volumeReconstructorIDSelector.currentText,
self.onVolumeLiveReconstructed,
self.getLiveReconstructionOutputFilename(),
self.LIVE_VOLUME_NODE_NAME)
def onReconstVolume(self):
self.offlineReconstructButton.setIcon(self.waitIcon)
self.offlineReconstructButton.setText(
" Offline Reconstruction in progress ...")
self.offlineReconstructButton.setEnabled(False)
self.plusRemoteLogic.reconstructRecorded(
self.connectorNode.GetID(),
self.volumeReconstructorIDSelector.currentText,
self.offlineVolumeToReconstructSelector.currentText,
self.outputSpacing, self.onVolumeReconstructed,
self.OFFLINE_VOLUME_FILENAME, self.OFFLINE_VOLUME_NODE_NAME)
def onScoutScanReconstVolume(self):
self.startStopScoutScanButton.setIcon(self.waitIcon)
self.startStopScoutScanButton.setText(
" Scout Scan\n Reconstruction in progress ...")
self.startStopScoutScanButton.setEnabled(False)
self.plusRemoteLogic.reconstructRecorded(
self.connectorNode.GetID(),
self.volumeReconstructorIDSelector.currentText,
self.lastScoutRecordingOutputFilename, self.outputSpacing,
self.onScoutVolumeReconstructed, self.SCOUT_VOLUME_FILENAME,
self.SCOUT_VOLUME_NODE_NAME)
def onRequestVolumeReconstructionSnapshot(self, stopFlag=""):
self.plusRemoteLogic.getVolumeReconstructionSnapshot(
self.connectorNode.GetID(),
self.volumeReconstructorIDSelector.currentText,
self.LIVE_VOLUME_FILENAME, self.LIVE_VOLUME_NODE_NAME,
self.APPLY_HOLE_FILLING_FOR_SNAPSHOT, self.onSnapshotAcquired)
def executeCommandDelayed(self, method, delay=100):
# Order of OpenIGTLink message receiving and processing is not guaranteed to be the same
# therefore we wait a bit to make sure the image message is processed as well
QTimer.singleShot(delay, method)
def printCommandResponse(self, command, q):
statusText = "Command {0} [{1}]: {2}\n".format(
command.GetCommandName(), command.GetID(),
command.StatusToString(command.GetStatus()))
if command.GetResponseMessage():
statusText = statusText + command.GetResponseMessage()
elif command.GetResponseText():
statusText = statusText + command.GetResponseText()
logging.debug(statusText)
def onGetCaptureDeviceCommandResponseReceived(self, command, q):
self.printCommandResponse(command, q)
if command.GetStatus() != command.CommandSuccess:
return
captureDeviceIdsListString = command.GetResponseMessage()
if captureDeviceIdsListString:
captureDevicesIdsList = captureDeviceIdsListString.split(",")
else:
captureDevicesIdsList = []
for i in range(0, len(captureDevicesIdsList)):
if self.captureIDSelector.findText(captureDevicesIdsList[i]) == -1:
self.captureIDSelector.addItem(captureDevicesIdsList[i])
def onGetVolumeReconstructorDeviceCommandResponseReceived(
self, command, q):
self.printCommandResponse(command, q)
if command.GetStatus() != command.CommandSuccess:
return
volumeReconstructorDeviceIdsListString = command.GetResponseMessage()
if volumeReconstructorDeviceIdsListString:
volumeReconstructorDeviceIdsList = volumeReconstructorDeviceIdsListString.split(
",")
else:
volumeReconstructorDeviceIdsList = []
self.volumeReconstructorIDSelector.clear()
self.volumeReconstructorIDSelector.addItems(
volumeReconstructorDeviceIdsList)
self.startStopRecordingButton.setEnabled(True)
self.offlineReconstructButton.setEnabled(True)
self.startStopScoutScanButton.setEnabled(True)
if self.roiNode:
self.startStopLiveReconstructionButton.setEnabled(True)
def onVolumeRecorded(self, command, q):
self.printCommandResponse(command, q)
self.offlineReconstructButton.setEnabled(True)
volumeToReconstructFileName = os.path.basename(
command.GetResponseMessage())
self.offlineVolumeToReconstructSelector.insertItem(
0, volumeToReconstructFileName)
self.offlineVolumeToReconstructSelector.setCurrentIndex(0)
def onScoutVolumeRecorded(self, command, q):
self.printCommandResponse(command, q)
self.offlineReconstructButton.setEnabled(True)
if command.GetStatus() == command.CommandExpired:
logging.fatal(
"Scout Volume Recording: Timeout while waiting for volume reconstruction result"
)
return
if command.GetStatus() == command.CommandSuccess:
self.lastScoutRecordingOutputFilename = os.path.basename(
command.GetResponseMessage())
self.onScoutScanReconstVolume()
def onVolumeReconstructed(self, command, q):
self.printCommandResponse(command, q)
self.offlineReconstructButton.setIcon(self.recordIcon)
self.offlineReconstructButton.setText("Offline Reconstruction")
self.offlineReconstructButton.setEnabled(True)
self.offlineReconstructButton.setChecked(False)
if command.GetStatus() == command.CommandExpired:
# volume reconstruction command timed out
logging.fatal(
"Volume Reconstruction: Timeout while waiting for volume reconstruction result"
)
return
if command.GetStatus() != command.CommandSuccess:
logging.debug("Volume Reconstruction: " +
command.GetResponseMessage())
return
self.executeCommandDelayed(self.onVolumeReconstructedFinalize)
def onVolumeReconstructedFinalize(self):
applicationLogic = slicer.app.applicationLogic()
applicationLogic.FitSliceToAll()
self.guideletParent.showVolumeRendering(self.getOfflineVolumeRecNode())
def onScoutVolumeReconstructed(self, command, q):
self.printCommandResponse(command, q)
if command.GetStatus() == command.CommandExpired:
logging.fatal(
"Scout Volume Reconstruction: Timeout while waiting for scout volume reconstruction result"
)
return
self.startStopScoutScanButton.setIcon(self.recordIcon)
self.startStopScoutScanButton.setText(
" Scout Scan\n Start Recording")
self.startStopScoutScanButton.setEnabled(True)
if command.GetStatus() != command.CommandSuccess:
logging.debug("Scout Volume Reconstruction: " +
command.GetResponseMessage())
return
self.executeCommandDelayed(self.onScoutVolumeReconstructedFinalize)
def onScoutVolumeReconstructedFinalize(self):
# Create and initialize ROI after scout scan because low resolution scout scan is used to set
# a smaller ROI for the live high resolution reconstruction
self.roiNode = self.logic.onRoiInitialization(
self.SCOUT_VOLUME_NODE_NAME, self.roiNode)
self.roiOrigin, self.roiExtent = self.logic.updateVolumeOriginAndExtentFromROI(
self.LIVE_OUTPUT_VOLUME_SPACING, self.roiNode)
scoutScanVolumeNode = self.getScoutVolumeNode()
applicationLogic = slicer.app.applicationLogic()
applicationLogic.FitSliceToAll()
self.guideletParent.showVolumeRendering(scoutScanVolumeNode)
def onSnapshotAcquired(self, command, q):
self.printCommandResponse(command, q)
if not self.startStopLiveReconstructionButton.isChecked():
# live volume reconstruction is not active
return
self.executeCommandDelayed(self.onSnapshotAcquiredFinalize)
def onSnapshotAcquiredFinalize(self):
self.guideletParent.showVolumeRendering(self.getLiveVolumeRecNode())
self.snapshotTimer.start(self.SNAPSHOT_INTERVAL * 1000)
def onVolumeLiveReconstructed(self, command, q):
self.printCommandResponse(command, q)
if command.GetStatus() == command.CommandExpired:
logging.fatal(
"LIVE Volume Reconstruction: Failed to stop volume reconstruction"
)
return
if command.GetStatus() != command.CommandSuccess:
logging.debug("LIVE Volume Reconstruction " +
command.GetResponseMessage())
return
self.executeCommandDelayed(self.getLiveVolumeRecNode)
def onVolumeLiveReconstructedFinalize(self):
self.guideletParent.showVolumeRendering(self.getLiveVolumeRecNode())
class ProstateTRUSNavUltrasound(UltraSound):
OFFLINE_VOLUME_FILENAME = "RecVol_Reference.mha"
SCOUT_VOLUME_FILENAME = "ScoutScan.mha"
LIVE_VOLUME_FILENAME = "LiveReconstructedVolume.mha"
RECORDING_FILENAME = "Recording.mha"
SCOUT_RECORDING_FILENAME = "ScoutScanRecording.mha"
LIVE_RECORDING_FILENAME = LIVE_VOLUME_FILENAME
SCOUT_VOLUME_NODE_NAME = "ScoutScan"
OFFLINE_VOLUME_NODE_NAME = "RecVol_Reference"
LIVE_VOLUME_NODE_NAME = "liveReconstruction"
APPLY_HOLE_FILLING_FOR_SNAPSHOT = False
SNAPSHOT_INTERVAL = 3
OUTPUT_VOLUME_SPACING = 3
LIVE_OUTPUT_VOLUME_SPACING = 1
@property
def roiNode(self):
return self._roiNode
@roiNode.setter
def roiNode(self, node):
self._roiNode=node
if node is not None:
self.startStopLiveReconstructionButton.setEnabled(True)
else:
self.startStopLiveReconstructionButton.setEnabled(False)
def __init__(self, guideletParent):
UltraSound.__init__(self, guideletParent)
self.parameterNode = guideletParent.parameterNode
self.parameterNodeObserver = None
self._roiNode = None
self.liveOutputSpacingValue = [self.LIVE_OUTPUT_VOLUME_SPACING, self.LIVE_OUTPUT_VOLUME_SPACING,
self.LIVE_OUTPUT_VOLUME_SPACING]
self.outputSpacing = [self.OUTPUT_VOLUME_SPACING, self.OUTPUT_VOLUME_SPACING, self.OUTPUT_VOLUME_SPACING]
self.roiOrigin = None
self.roiExtent = None
self.defaultParameterNode = None
self.logic = ProstateTRUSNavUltrasoundLogic()
def setupPanel(self, parentWidget):
logging.debug('ProstateTRUSNavUltrasound.setupPanel')
self.connectorNode = self.guideletParent.connectorNode
self.connectorNodeConnected = False
collapsibleButton = ctkCollapsibleButton()
collapsibleButton.setProperty('collapsedHeight', 20)
setButtonStyle(collapsibleButton, 2.0)
collapsibleButton.text = "Ultrasound"
parentWidget.addWidget(collapsibleButton)
ultrasoundLayout = QFormLayout(collapsibleButton)
ultrasoundLayout.setContentsMargins(12,4,4,4)
ultrasoundLayout.setSpacing(4)
self.connectDisconnectButton = QPushButton("Connect")
self.connectDisconnectButton.setToolTip("If clicked, connection OpenIGTLink")
hbox = QHBoxLayout()
hbox.addWidget(self.connectDisconnectButton)
ultrasoundLayout.addRow(hbox)
self.setupIcons()
self.captureIDSelector = QComboBox()
self.captureIDSelector.setToolTip("Pick capture device ID")
self.captureIDSelector.setSizePolicy(QSizePolicy.Expanding, QSizePolicy.Expanding)
self.volumeReconstructorIDSelector = QComboBox()
self.volumeReconstructorIDSelector.setToolTip( "Pick volume reconstructor device ID" )
self.volumeReconstructorIDSelector.setSizePolicy(QSizePolicy.Expanding, QSizePolicy.Expanding)
self.startStopRecordingButton = QPushButton(" Start Recording")
self.startStopRecordingButton.setCheckable(True)
self.startStopRecordingButton.setIcon(self.recordIcon)
self.startStopRecordingButton.setEnabled(False)
self.startStopRecordingButton.setToolTip("If clicked, start recording")
self.startStopRecordingButton.setSizePolicy(QSizePolicy.Expanding, QSizePolicy.Expanding)
recordParametersControlsLayout = QGridLayout()
self.filenameLabel = self.createLabel("Filename:", visible=False)
recordParametersControlsLayout.addWidget(self.filenameLabel, 1, 0)
# Offline Reconstruction
self.offlineReconstructButton = QPushButton(" Offline Reconstruction")
self.offlineReconstructButton.setCheckable(True)
self.offlineReconstructButton.setIcon(self.recordIcon)
self.offlineReconstructButton.setEnabled(False)
self.offlineReconstructButton.setToolTip("If clicked, reconstruct recorded volume")
self.offlineReconstructButton.setSizePolicy(QSizePolicy.Expanding, QSizePolicy.Expanding)
self.offlineVolumeToReconstructSelector = QComboBox()
self.offlineVolumeToReconstructSelector.setEditable(True)
self.offlineVolumeToReconstructSelector.setToolTip( "Pick/set volume to reconstruct" )
self.offlineVolumeToReconstructSelector.visible = False
hbox = QHBoxLayout()
hbox.addWidget(self.startStopRecordingButton)
hbox.addWidget(self.offlineReconstructButton)
ultrasoundLayout.addRow(hbox)
# Scout scan (record and low resolution reconstruction) and live reconstruction
# Scout scan part
self.startStopScoutScanButton = QPushButton(" Scout scan\n Start recording")
self.startStopScoutScanButton.setCheckable(True)
self.startStopScoutScanButton.setIcon(self.recordIcon)
self.startStopScoutScanButton.setToolTip("If clicked, start recording")
self.startStopScoutScanButton.setEnabled(False)
self.startStopScoutScanButton.setSizePolicy(QSizePolicy.Expanding, QSizePolicy.Expanding)
self.startStopLiveReconstructionButton = QPushButton(" Start live reconstruction")
self.startStopLiveReconstructionButton.setCheckable(True)
self.startStopLiveReconstructionButton.setIcon(self.recordIcon)
self.startStopLiveReconstructionButton.setToolTip("If clicked, start live reconstruction")
self.startStopLiveReconstructionButton.setEnabled(False)
self.startStopLiveReconstructionButton.setSizePolicy(QSizePolicy.Expanding, QSizePolicy.Expanding)
self.displayRoiButton = QToolButton()
self.displayRoiButton.setCheckable(True)
self.displayRoiButton.setIcon(self.visibleOffIcon)
self.displayRoiButton.setToolTip("If clicked, display ROI")
hbox = QHBoxLayout()
hbox.addWidget(self.startStopScoutScanButton)
hbox.addWidget(self.startStopLiveReconstructionButton)
# hbox.addWidget(self.displayRoiButton)
ultrasoundLayout.addRow(hbox)
self.snapshotTimer = QTimer()
self.snapshotTimer.setSingleShot(True)
self.onParameterSetSelected()
return collapsibleButton
def setupResliceDriver(self):
layoutManager = slicer.app.layoutManager()
# Show ultrasound in red view.
redSlice = layoutManager.sliceWidget('Red')
redSliceLogic = redSlice.sliceLogic()
redSliceLogic.GetSliceCompositeNode().SetBackgroundVolumeID(self.liveUltrasoundNode_Reference.GetID())
resliceLogic = slicer.modules.volumereslicedriver.logic()
if resliceLogic:
redNode = slicer.util.getNode('vtkMRMLSliceNodeRed')
redNode.SetSliceResolutionMode(slicer.vtkMRMLSliceNode.SliceResolutionMatchVolumes)
resliceLogic.SetDriverForSlice(self.liveUltrasoundNode_Reference.GetID(), redNode)
resliceLogic.SetModeForSlice(6, redNode) # Transverse mode, default for PLUS ultrasound.
else:
logging.warning('Logic not found for Volume Reslice Driver')
def createCollapsibleButton(self, text, collapsed=False):
collapsibleButton = ctkCollapsibleButton()
collapsibleButton.text = text
collapsibleButton.collapsed = collapsed
return collapsibleButton
def createLabel(self, text, visible=True):
label = QLabel()
label.setText(text)
label.visible = visible
return label
def setupConnections(self):
self.startStopRecordingButton.connect('clicked(bool)', self.onStartStopRecordingButtonClicked)
self.offlineReconstructButton.connect('clicked(bool)', self.onReconstVolume)
self.startStopScoutScanButton.connect('clicked(bool)', self.onStartStopScoutScanButtonClicked)
self.startStopLiveReconstructionButton.connect('clicked(bool)', self.onStartStopLiveReconstructionButtonClicked)
self.displayRoiButton.connect('clicked(bool)', self.onDisplayRoiButtonClicked)
self.captureIDSelector.connect('currentIndexChanged(QString)', self.updateParameterNodeFromGui)
self.volumeReconstructorIDSelector.connect('currentIndexChanged(QString)', self.updateParameterNodeFromGui)
self.offlineVolumeToReconstructSelector.connect('currentIndexChanged(int)', self.updateParameterNodeFromGui)
self.displayRoiButton.connect('clicked(bool)', self.updateParameterNodeFromGui)
self.snapshotTimer.timeout.connect(self.onRequestVolumeReconstructionSnapshot)
self.connectDisconnectButton.connect('clicked(bool)', self.onConnectDisconnectButtonClicked)
def disconnect(self):
self.startStopRecordingButton.disconnect('clicked(bool)', self.onStartStopRecordingButtonClicked)
self.offlineReconstructButton.disconnect('clicked(bool)', self.onReconstVolume)
self.startStopScoutScanButton.disconnect('clicked(bool)', self.onStartStopScoutScanButtonClicked)
self.startStopLiveReconstructionButton.disconnect('clicked(bool)', self.onStartStopLiveReconstructionButtonClicked)
self.displayRoiButton.disconnect('clicked(bool)', self.onDisplayRoiButtonClicked)
self.captureIDSelector.disconnect('currentIndexChanged(QString)', self.updateParameterNodeFromGui)
self.volumeReconstructorIDSelector.disconnect('currentIndexChanged(QString)', self.updateParameterNodeFromGui)
self.offlineVolumeToReconstructSelector.disconnect('currentIndexChanged(int)', self.updateParameterNodeFromGui)
self.displayRoiButton.disconnect('clicked(bool)', self.updateParameterNodeFromGui)
self.snapshotTimer.timeout.disconnect(self.onRequestVolumeReconstructionSnapshot)
self.connectDisconnectButton.disconnect('clicked(bool)', self.onConnectDisconnectButtonClicked)
def setupIcons(self):
self.plusRemoteModuleDirectoryPath = slicer.modules.plusremote.path.replace("PlusRemote.py", "")
self.recordIcon = QIcon(self.plusRemoteModuleDirectoryPath + '/Resources/Icons/icon_Record.png')
self.stopIcon = QIcon(self.plusRemoteModuleDirectoryPath + '/Resources/Icons/icon_Stop.png')
self.waitIcon = QIcon(self.plusRemoteModuleDirectoryPath + '/Resources/Icons/icon_Wait.png')
self.visibleOffIcon = QIcon(":Icons\VisibleOff.png")
self.visibleOnIcon = QIcon(":Icons\VisibleOn.png")
def onParameterSetSelected(self):
# Set up default values for new nodes
if self.parameterNode:
self.plusRemoteLogic.setDefaultParameters(self.parameterNode)
self.updateGuiFromParameterNode()
def updateGuiFromParameterNode(self):
self.parameterVolumeList = {'OfflineVolumeToReconstruct': self.offlineVolumeToReconstructSelector}
for parameter in self.parameterVolumeList:
if self.parameterNode.GetParameter(parameter):
self.parameterVolumeList[parameter].blockSignals(True)
self.parameterVolumeList[parameter].blockSignals(False)
if self.parameterNode.GetParameter('CaptureID'):
self.captureIDSelector.blockSignals(True)
for i in range(0, self.captureIDSelector.count):
if self.parameterNode.GetParameter('CaptureID') == self.captureIDSelector.itemText(i):
self.captureIDSelector.setCurrentIndex(int(self.parameterNode.GetParameter('CaptureIdIndex')))
self.captureIDSelector.blockSignals(False)
if self.parameterNode.GetParameter('VolumeReconstructor'):
self.volumeReconstructorIDSelector.blockSignals(True)
for i in range(0, self.volumeReconstructorIDSelector.count):
if self.parameterNode.GetParameter('VolumeReconstructor') == self.volumeReconstructorIDSelector.itemText(i):
self.volumeReconstructorIDSelector.setCurrentIndex(int(self.parameterNode.GetParameter('VolumeReconstructorIndex')))
self.volumeReconstructorIDSelector.blockSignals(False)
self.roiNode = self.parameterNode.GetNthNodeReference('ROI', 0)
def updateParameterNodeFromGui(self):
#Update parameter node value to save when user change value in the interface
if not self.parameterNode:
return
self.parametersList = {'CaptureID': self.captureIDSelector.currentText,
'CaptureIdIndex': self.captureIDSelector.currentIndex,
'VolumeReconstructor': self.volumeReconstructorIDSelector.currentText,
'VolumeReconstructorIndex': self.volumeReconstructorIDSelector.currentIndex,
'OfflineVolumeToReconstruct': self.offlineVolumeToReconstructSelector.currentIndex}
for parameter in self.parametersList:
self.parameterNode.SetParameter(parameter, str(self.parametersList[parameter]))
if self.roiNode:
roiNodeID = self.roiNode.GetID()
self.parameterNode.SetNthNodeReferenceID('ROI', 0, roiNodeID)
#
# Connector observation and actions
#
def onConnectorNodeConnected(self):
logging.debug("ProstateTrusUltrasound:onConnectorNodeConnected")
self.connectorNodeConnected = True
self.captureIDSelector.setDisabled(False)
self.volumeReconstructorIDSelector.setDisabled(False)
self.plusRemoteLogic.getCaptureDeviceIds(self.connectorNode.GetID(),
self.onGetCaptureDeviceCommandResponseReceived)
self.plusRemoteLogic.getVolumeReconstructorDeviceIds(self.connectorNode.GetID(),
self.onGetVolumeReconstructorDeviceCommandResponseReceived)
self.connectDisconnectButton.setText("Disconnect")
def onConnectorNodeDisconnected(self):
logging.debug("ProstateTrusUltrasound:onConnectorNodeDisconnected")
self.connectorNodeConnected = False
self.startStopRecordingButton.setEnabled(False)
self.startStopScoutScanButton.setEnabled(False)
self.startStopLiveReconstructionButton.setEnabled(False)
self.offlineReconstructButton.setEnabled(False)
self.captureIDSelector.setDisabled(True)
self.volumeReconstructorIDSelector.setDisabled(True)
self.connectDisconnectButton.setText("Connect")
def getLiveVolumeRecNode(self):
liveVolumeRecNode = slicer.util.getNode(self.LIVE_VOLUME_NODE_NAME)
return liveVolumeRecNode
def getOfflineVolumeRecNode(self):
offlineVolumeRecNode = slicer.util.getNode(self.OFFLINE_VOLUME_NODE_NAME)
return offlineVolumeRecNode
def getScoutVolumeNode(self):
scoutScanVolumeNode = slicer.util.getNode(self.SCOUT_VOLUME_NODE_NAME)
return scoutScanVolumeNode
def onConnectDisconnectButtonClicked(self):
if self.connectorNode.GetState() == slicer.vtkMRMLIGTLConnectorNode.STATE_CONNECTED:
self.connectorNode.Stop()
else:
self.connectorNode.Start()
def onStartStopRecordingButtonClicked(self):
if self.startStopRecordingButton.isChecked():
self.startStopRecordingButton.setText(" Stop Recording")
self.startStopRecordingButton.setIcon(self.stopIcon)
self.startStopRecordingButton.setToolTip( "If clicked, stop recording" )
self.onStartRecording(self.generateRecordingOutputFilename())
else:
self.startStopRecordingButton.setText(" Start Recording")
self.startStopRecordingButton.setIcon(self.recordIcon)
self.startStopRecordingButton.setToolTip( "If clicked, start recording" )
self.onStopRecording(self.onVolumeRecorded)
def onStartStopScoutScanButtonClicked(self):
if self.startStopScoutScanButton.isChecked():
self.startStopScoutScanButton.setText(" Scout Scan\n Stop Recording and Reconstruct Recorded Volume")
self.startStopScoutScanButton.setIcon(self.stopIcon)
self.startStopScoutScanButton.setToolTip( "If clicked, stop recording and reconstruct recorded volume" )
self.onStartRecording(self.generateScoutRecordingOutputFilename())
else:
self.onStopRecording(self.onScoutVolumeRecorded)
def onStartStopLiveReconstructionButtonClicked(self):
if self.startStopLiveReconstructionButton.isChecked():
if self.roiNode:
self.roiOrigin, self.roiExtent = self.logic.updateVolumeOriginAndExtentFromROI(self.LIVE_OUTPUT_VOLUME_SPACING,
self.roiNode)
self.startStopLiveReconstructionButton.setText(" Stop Live Reconstruction")
self.startStopLiveReconstructionButton.setIcon(self.stopIcon)
self.startStopLiveReconstructionButton.setToolTip( "If clicked, stop live reconstruction" )
self.onStartRecording(self.getLiveRecordingOutputFilename())
self.onStartReconstruction()
else:
self.startStopLiveReconstructionButton.setText(" Start Live Reconstruction")
self.startStopLiveReconstructionButton.setIcon(self.recordIcon)
self.startStopLiveReconstructionButton.setToolTip( "If clicked, start live reconstruction" )
self.onStopRecording(self.printCommandResponse)
self.onStopReconstruction()
def onDisplayRoiButtonClicked(self):
if self.displayRoiButton.isChecked():
self.displayRoiButton.setIcon(self.visibleOnIcon)
self.displayRoiButton.setToolTip("If clicked, hide ROI")
if self.roiNode:
self.roiNode.SetDisplayVisibility(1)
else:
self.displayRoiButton.setIcon(self.visibleOffIcon)
self.displayRoiButton.setToolTip("If clicked, display ROI")
if self.roiNode:
self.roiNode.SetDisplayVisibility(0)
def generateRecordingOutputFilename(self):
return self.plusRemoteLogic.addTimestampToFilename(self.RECORDING_FILENAME)
def generateScoutRecordingOutputFilename(self):
return self.plusRemoteLogic.addTimestampToFilename(self.SCOUT_RECORDING_FILENAME)
def getLiveRecordingOutputFilename(self):
return self.plusRemoteLogic.addTimestampToFilename(self.LIVE_RECORDING_FILENAME)
def getLiveReconstructionOutputFilename(self):
return self.plusRemoteLogic.addTimestampToFilename(self.LIVE_VOLUME_FILENAME)
def onStartRecording(self, filename):
self.plusRemoteLogic.startRecording(self.connectorNode.GetID(), self.captureIDSelector.currentText,
filename, self.printCommandResponse)
def onStopRecording(self, callback):
self.plusRemoteLogic.stopRecording(self.connectorNode.GetID(), self.captureIDSelector.currentText, callback)
def onStartReconstruction(self):
if self.roiNode:
self.roiOrigin, self.roiExtent = self.logic.updateVolumeOriginAndExtentFromROI(self.LIVE_OUTPUT_VOLUME_SPACING,
self.roiNode)
self.plusRemoteLogic.startVolumeReconstuction(self.connectorNode.GetID(),
self.volumeReconstructorIDSelector.currentText,
self.liveOutputSpacingValue, self.roiOrigin,
self.roiExtent, self.printCommandResponse,
self.getLiveReconstructionOutputFilename(), self.LIVE_VOLUME_NODE_NAME)
# Set up timer for requesting snapshot
self.snapshotTimer.start(self.SNAPSHOT_INTERVAL*1000)
def onStopReconstruction(self):
self.snapshotTimer.stop()
self.plusRemoteLogic.stopVolumeReconstruction(self.connectorNode.GetID(),
self.volumeReconstructorIDSelector.currentText,
self.onVolumeLiveReconstructed,
self.getLiveReconstructionOutputFilename(),
self.LIVE_VOLUME_NODE_NAME)
def onReconstVolume(self):
self.offlineReconstructButton.setIcon(self.waitIcon)
self.offlineReconstructButton.setText(" Offline Reconstruction in progress ...")
self.offlineReconstructButton.setEnabled(False)
self.plusRemoteLogic.reconstructRecorded(self.connectorNode.GetID(), self.volumeReconstructorIDSelector.currentText,
self.offlineVolumeToReconstructSelector.currentText, self.outputSpacing,
self.onVolumeReconstructed, self.OFFLINE_VOLUME_FILENAME,
self.OFFLINE_VOLUME_NODE_NAME)
def onScoutScanReconstVolume(self):
self.startStopScoutScanButton.setIcon(self.waitIcon)
self.startStopScoutScanButton.setText(" Scout Scan\n Reconstruction in progress ...")
self.startStopScoutScanButton.setEnabled(False)
self.plusRemoteLogic.reconstructRecorded(self.connectorNode.GetID(), self.volumeReconstructorIDSelector.currentText,
self.lastScoutRecordingOutputFilename, self.outputSpacing,
self.onScoutVolumeReconstructed, self.SCOUT_VOLUME_FILENAME,
self.SCOUT_VOLUME_NODE_NAME)
def onRequestVolumeReconstructionSnapshot(self, stopFlag = ""):
self.plusRemoteLogic.getVolumeReconstructionSnapshot(self.connectorNode.GetID(),
self.volumeReconstructorIDSelector.currentText,
self.LIVE_VOLUME_FILENAME,
self.LIVE_VOLUME_NODE_NAME,
self.APPLY_HOLE_FILLING_FOR_SNAPSHOT, self.onSnapshotAcquired)
def executeCommandDelayed(self, method, delay=100):
# Order of OpenIGTLink message receiving and processing is not guaranteed to be the same
# therefore we wait a bit to make sure the image message is processed as well
QTimer.singleShot(delay, method)
def printCommandResponse(self, command, q):
statusText = "Command {0} [{1}]: {2}\n".format(command.GetCommandName(), command.GetID(),
command.StatusToString(command.GetStatus()))
if command.GetResponseMessage():
statusText = statusText + command.GetResponseMessage()
elif command.GetResponseText():
statusText = statusText + command.GetResponseText()
logging.debug(statusText)
def onGetCaptureDeviceCommandResponseReceived(self, command, q):
self.printCommandResponse(command, q)
if command.GetStatus() != command.CommandSuccess:
return
captureDeviceIdsListString = command.GetResponseMessage()
if captureDeviceIdsListString:
captureDevicesIdsList = captureDeviceIdsListString.split(",")
else:
captureDevicesIdsList = []
for i in range(0,len(captureDevicesIdsList)):
if self.captureIDSelector.findText(captureDevicesIdsList[i]) == -1:
self.captureIDSelector.addItem(captureDevicesIdsList[i])
def onGetVolumeReconstructorDeviceCommandResponseReceived(self, command, q):
self.printCommandResponse(command, q)
if command.GetStatus() != command.CommandSuccess:
return
volumeReconstructorDeviceIdsListString = command.GetResponseMessage()
if volumeReconstructorDeviceIdsListString:
volumeReconstructorDeviceIdsList = volumeReconstructorDeviceIdsListString.split(",")
else:
volumeReconstructorDeviceIdsList = []
self.volumeReconstructorIDSelector.clear()
self.volumeReconstructorIDSelector.addItems(volumeReconstructorDeviceIdsList)
self.startStopRecordingButton.setEnabled(True)
self.offlineReconstructButton.setEnabled(True)
self.startStopScoutScanButton.setEnabled(True)
if self.roiNode:
self.startStopLiveReconstructionButton.setEnabled(True)
def onVolumeRecorded(self, command, q):
self.printCommandResponse(command, q)
self.offlineReconstructButton.setEnabled(True)
volumeToReconstructFileName = os.path.basename(command.GetResponseMessage())
self.offlineVolumeToReconstructSelector.insertItem(0,volumeToReconstructFileName)
self.offlineVolumeToReconstructSelector.setCurrentIndex(0)
def onScoutVolumeRecorded(self, command, q):
self.printCommandResponse(command,q)
self.offlineReconstructButton.setEnabled(True)
if command.GetStatus() == command.CommandExpired:
logging.fatal("Scout Volume Recording: Timeout while waiting for volume reconstruction result")
return
if command.GetStatus() == command.CommandSuccess:
self.lastScoutRecordingOutputFilename = os.path.basename(command.GetResponseMessage())
self.onScoutScanReconstVolume()
def onVolumeReconstructed(self, command, q):
self.printCommandResponse(command,q)
self.offlineReconstructButton.setIcon(self.recordIcon)
self.offlineReconstructButton.setText("Offline Reconstruction")
self.offlineReconstructButton.setEnabled(True)
self.offlineReconstructButton.setChecked(False)
if command.GetStatus() == command.CommandExpired:
# volume reconstruction command timed out
logging.fatal("Volume Reconstruction: Timeout while waiting for volume reconstruction result")
return
if command.GetStatus() != command.CommandSuccess:
logging.debug("Volume Reconstruction: " + command.GetResponseMessage())
return
self.executeCommandDelayed(self.onVolumeReconstructedFinalize)
def onVolumeReconstructedFinalize(self):
applicationLogic = slicer.app.applicationLogic()
applicationLogic.FitSliceToAll()
self.guideletParent.showVolumeRendering(self.getOfflineVolumeRecNode())
def onScoutVolumeReconstructed(self, command, q):
self.printCommandResponse(command,q)
if command.GetStatus() == command.CommandExpired:
logging.fatal("Scout Volume Reconstruction: Timeout while waiting for scout volume reconstruction result")
return
self.startStopScoutScanButton.setIcon(self.recordIcon)
self.startStopScoutScanButton.setText(" Scout Scan\n Start Recording")
self.startStopScoutScanButton.setEnabled(True)
if command.GetStatus() != command.CommandSuccess:
logging.debug("Scout Volume Reconstruction: " + command.GetResponseMessage())
return
self.executeCommandDelayed(self.onScoutVolumeReconstructedFinalize)
def onScoutVolumeReconstructedFinalize(self):
# Create and initialize ROI after scout scan because low resolution scout scan is used to set
# a smaller ROI for the live high resolution reconstruction
self.roiNode = self.logic.onRoiInitialization(self.SCOUT_VOLUME_NODE_NAME, self.roiNode)
self.roiOrigin, self.roiExtent = self.logic.updateVolumeOriginAndExtentFromROI(self.LIVE_OUTPUT_VOLUME_SPACING,
self.roiNode)
scoutScanVolumeNode = self.getScoutVolumeNode()
applicationLogic = slicer.app.applicationLogic()
applicationLogic.FitSliceToAll()
self.guideletParent.showVolumeRendering(scoutScanVolumeNode)
def onSnapshotAcquired(self, command, q):
self.printCommandResponse(command,q)
if not self.startStopLiveReconstructionButton.isChecked():
# live volume reconstruction is not active
return
self.executeCommandDelayed(self.onSnapshotAcquiredFinalize)
def onSnapshotAcquiredFinalize(self):
self.guideletParent.showVolumeRendering(self.getLiveVolumeRecNode())
self.snapshotTimer.start(self.SNAPSHOT_INTERVAL*1000)
def onVolumeLiveReconstructed(self, command, q):
self.printCommandResponse(command,q)
if command.GetStatus() == command.CommandExpired:
logging.fatal("LIVE Volume Reconstruction: Failed to stop volume reconstruction")
return
if command.GetStatus() != command.CommandSuccess:
logging.debug("LIVE Volume Reconstruction " + command.GetResponseMessage())
return
self.executeCommandDelayed(self.getLiveVolumeRecNode)
def onVolumeLiveReconstructedFinalize(self):
self.guideletParent.showVolumeRendering(self.getLiveVolumeRecNode())