def setup_ui(self):
hbox = QHBoxLayout()
self.view = MyGraphicsView(self.project)
hbox.addWidget(self.view)
vbox = QVBoxLayout()
vbox.addWidget(QLabel('Choose video:'))
self.listview = QListView()
self.listview.setStyleSheet('QListView::item { height: 26px; }')
vbox.addWidget(self.listview)
pb = QPushButton('Connectivity Diagram')
pb.clicked.connect(self.connectivity_diagram)
vbox.addWidget(pb)
vbox.addWidget(qtutil.separator())
vbox2 = QVBoxLayout()
w = QWidget()
w.setLayout(vbox2)
vbox.addWidget(w)
vbox.addWidget(qtutil.separator())
vbox.addWidget(QLabel('ROIs'))
self.roi_list = QListView()
vbox.addWidget(self.roi_list)
hbox.addLayout(vbox)
hbox.setStretch(0, 1)
hbox.setStretch(1, 0)
self.setLayout(hbox)
def setup_ui(self):
vbox_view = QVBoxLayout()
vbox_view.addWidget(self.view)
self.view.vb.setCursor(Qt.CrossCursor)
self.left.setLayout(vbox_view)
vbox = QVBoxLayout()
self.new_json_pb.clicked.connect(self.new_json)
vbox.addWidget(self.new_json_pb)
self.video_list.setStyleSheet('QListView::item { height: 26px; }')
self.video_list.setSelectionMode(QAbstractItemView.ExtendedSelection)
self.video_list.setEditTriggers(QAbstractItemView.NoEditTriggers)
vbox.addWidget(self.video_list)
vbox.addWidget(qtutil.separator())
vbox.addWidget(self.origin_label)
self.shift_pb.clicked.connect(self.shift_to_this)
vbox.addWidget(self.shift_pb)
vbox.addWidget(QLabel('Data imported to this project after shift'))
self.list_shifted.setStyleSheet('QListView::item { height: 26px; }')
self.list_shifted.setSelectionMode(QAbstractItemView.SingleSelection)
vbox.addWidget(self.list_shifted)
self.right.setLayout(vbox)
splitter = QSplitter(Qt.Horizontal)
splitter.setHandleWidth(3)
splitter.setStyleSheet('QSplitter::handle {background: #cccccc;}')
splitter.addWidget(self.left)
splitter.addWidget(self.right)
hbox_global = QHBoxLayout()
hbox_global.addWidget(splitter)
self.setLayout(hbox_global)
def setup_ui(self):
super().setup_ui()
self.vbox.addWidget(self.load_table_pb)
self.vbox.addWidget(self.table_widget)
self.vbox.addWidget(self.update_table_pb)
self.vbox.addWidget(self.special_warning_pb)
self.vbox.addWidget(qtutil.separator())
self.vbox.addWidget(QLabel('ROIs'))
self.vbox.addWidget(self.roi_list)
def setup_ui(self):
super().setup_ui()
self.vbox.addWidget(self.load_table_pb )
self.vbox.addWidget(self.table_widget)
self.vbox.addWidget(self.update_table_pb)
self.vbox.addWidget(self.special_warning_pb)
self.vbox.addWidget(qtutil.separator())
self.vbox.addWidget(QLabel('ROIs'))
self.vbox.addWidget(self.roi_list)
def setup_ui(self):
vbox_view = QVBoxLayout()
vbox_view.addWidget(self.view)
self.view.vb.crosshair_visible = False
self.left.setLayout(vbox_view)
vbox = QVBoxLayout()
list_of_manips = pfs.get_list_of_project_manips(self.project)
self.toolbutton = pfs.add_combo_dropdown(self, list_of_manips)
self.toolbutton.activated.connect(self.refresh_video_list_via_combo_box)
vbox.addWidget(self.toolbutton)
vbox.addWidget(QLabel('Select video:'))
self.video_list.setSelectionMode(QAbstractItemView.ExtendedSelection)
self.video_list.setEditTriggers(QAbstractItemView.NoEditTriggers)
self.video_list.setStyleSheet('QListView::item { height: 26px; }')
vbox.addWidget(self.video_list)
vbox.addWidget(qtutil.separator())
vbox.addWidget(mue.InfoWidget('Click shift to select multiple ROIs. Drag to reorder.'))
vbox.addWidget(QLabel('Select ROIs:'))
self.roi_list.setSelectionMode(QAbstractItemView.ExtendedSelection)
self.roi_list.setAcceptDrops(True)
self.roi_list.setDragEnabled(True)
self.roi_list.setDropIndicatorShown(True)
self.roi_list.setDragDropMode(QAbstractItemView.DragDrop)
self.roi_list.setDragDropOverwriteMode(False)
vbox.addWidget(self.roi_list)
vbox.addWidget(QLabel('Choose colormap:'))
# todo: colormap list should be dealt with in a seperate script
self.cm_comboBox.addItem("jet")
self.cm_comboBox.addItem("coolwarm")
self.cm_comboBox.addItem("PRGn")
self.cm_comboBox.addItem("seismic")
self.cm_comboBox.addItem("viridis")
self.cm_comboBox.addItem("inferno")
self.cm_comboBox.addItem("plasma")
self.cm_comboBox.addItem("magma")
vbox.addWidget(self.cm_comboBox)
self.cm_comboBox.activated[str].connect(self.cm_choice)
pb = QPushButton('Connectivity &Matrix')
pb.clicked.connect(self.connectivity_triggered)
vbox.addWidget(pb)
pb = QPushButton('Save all open matrices to csv')
pb.clicked.connect(self.save_open_dialogs_to_csv)
vbox.addWidget(pb)
self.right.setLayout(vbox)
splitter = QSplitter(Qt.Horizontal)
splitter.setHandleWidth(3)
splitter.setStyleSheet('QSplitter::handle {background: #cccccc;}')
splitter.addWidget(self.left)
splitter.addWidget(self.right)
hbox_global = QHBoxLayout()
hbox_global.addWidget(splitter)
self.setLayout(hbox_global)
def setup_ui(self):
super().setup_ui()
self.vbox.addWidget(QLabel("Export Framerate (Hz)"))
self.vbox.addWidget(self.framerate_sb)
self.framerate_sb.setMinimum(1)
self.framerate_sb.setMaximum(99999)
self.vbox.addWidget(QLabel("Export dtype"))
for t in constants.DTYPES:
self.cb_dtype.addItem(t)
self.vbox.addWidget(self.cb_dtype)
self.vbox.addWidget(self.export_pb)
self.vbox.addWidget(qtutil.separator())
self.vbox.addWidget(self.export_filetype_cb)
self.export_filetype_cb.addItems(['.avi', '.tif', '.raw'])
self.vbox.addWidget(self.export_bulk_pb)
def setup_ui(self):
super().setup_ui()
self.vbox.addWidget(QLabel("Export Framerate (Hz)"))
self.vbox.addWidget(self.framerate_sb)
self.framerate_sb.setMinimum(1)
self.framerate_sb.setMaximum(99999)
self.vbox.addWidget(QLabel("Export dtype"))
for t in constants.DTYPES:
self.cb_dtype.addItem(t)
self.vbox.addWidget(self.cb_dtype)
self.vbox.addWidget(self.export_pb)
self.vbox.addWidget(qtutil.separator())
self.vbox.addWidget(self.export_filetype_cb)
self.export_filetype_cb.addItems(['.avi', '.tif', '.raw'])
self.vbox.addWidget(self.export_bulk_pb)
def setup_ui(self):
vbox_view = QVBoxLayout()
vbox_view.addWidget(self.view)
self.left.setLayout(vbox_view)
vbox = QVBoxLayout()
list_of_manips = pfs.get_list_of_project_manips(self.project)
self.toolbutton = pfs.add_combo_dropdown(self, list_of_manips)
self.toolbutton.activated.connect(self.refresh_video_list_via_combo_box)
vbox.addWidget(self.toolbutton)
vbox.addWidget(QLabel('Choose video:'))
self.video_list = QListView()
self.video_list.setStyleSheet('QListView::item { height: 26px; }')
self.video_list.setEditTriggers(QAbstractItemView.NoEditTriggers)
vbox.addWidget(self.video_list)
pb = QPushButton('Load anatomical coordinates (relative to selected origin)')
pb.clicked.connect(self.load_ROI_table)
vbox.addWidget(pb)
vbox.addWidget(self.table_widget)
self.table_widget.itemChanged.connect(self.update_auto_rois)
pb = QPushButton('Add these ROIs to project')
pb.clicked.connect(self.auto_ROI)
vbox.addWidget(pb)
# vbox2 = QVBoxLayout()
# w = QWidget()
# w.setLayout(vbox2)
# vbox.addWidget(w)
vbox.addWidget(qtutil.separator())
vbox.addWidget(QLabel('ROIs'))
self.roi_list = QListView()
vbox.addWidget(self.roi_list)
self.right.setLayout(vbox)
splitter = QSplitter(Qt.Horizontal)
splitter.setHandleWidth(3)
splitter.setStyleSheet('QSplitter::handle {background: #cccccc;}')
splitter.addWidget(self.left)
splitter.addWidget(self.right)
hbox_global = QHBoxLayout()
hbox_global.addWidget(splitter)
self.setLayout(hbox_global)
def setup_ui(self):
vbox = QVBoxLayout()
## Related to importing Raws
self.setWindowTitle('Import Raw File')
#vbox.addWidget(QLabel('Set the size all data are to be rescaled to'))
grid = QGridLayout()
grid.addWidget(QLabel('Set channel and scale factor used for all imported data'), 0, 0)
# grid.addWidget(QLabel('Width:'), 0, 0)
# self.rescale_width = QSpinBox()
# self.rescale_width.setMinimum(1)
# self.rescale_width.setMaximum(1024)
# self.rescale_width.setValue(256)
# grid.addWidget(self.rescale_width, 0, 1)
#
# grid.addWidget(QLabel('Height:'), 1, 0)
# self.rescale_height = QSpinBox()
# self.rescale_height.setMinimum(1)
# self.rescale_height.setMaximum(1024)
# self.rescale_height.setValue(256)
# grid.addWidget(self.rescale_height, 1, 1)
grid.addWidget(QLabel('Scale Factor:'), 1, 0)
self.scale_factor = QDoubleSpinBox()
self.scale_factor.setSingleStep(0.25)
self.scale_factor.setMinimum(0.25)
self.scale_factor.setMaximum(1.00)
self.scale_factor.setValue(1.0)
grid.addWidget(self.scale_factor, 1, 1)
grid.addWidget(QLabel('Channel:'), 2, 0)
self.channel = QSpinBox()
self.channel.setMinimum(1)
self.channel.setMaximum(3)
self.channel.setValue(2)
grid.addWidget(self.channel, 2, 1)
grid.addWidget(qtutil.separator(), 3, 0)
grid.addWidget(qtutil.separator(), 3, 1)
grid.addWidget(QLabel('Set paramaters for all imported raws'), 4, 0)
grid.addWidget(QLabel('All raws will be rescaled and specified channel imported upon conversion'), 5, 0)
grid.addWidget(QLabel('Width:'), 6, 0)
self.sb_width = QSpinBox()
self.sb_width.setMinimum(1)
self.sb_width.setMaximum(1024)
self.sb_width.setValue(256)
grid.addWidget(self.sb_width, 6, 1)
grid.addWidget(QLabel('Height:'), 7, 0)
self.sb_height = QSpinBox()
self.sb_height.setMinimum(1)
self.sb_height.setMaximum(1024)
self.sb_height.setValue(256)
grid.addWidget(self.sb_height, 7, 1)
grid.addWidget(QLabel('Number of channels:'), 8, 0)
self.sb_channel = QSpinBox()
self.sb_channel.setMinimum(1)
self.sb_channel.setMaximum(3)
self.sb_channel.setValue(3)
grid.addWidget(self.sb_channel, 8, 1)
grid.addWidget(QLabel('dtype:'), 9, 0)
self.cb_dtype = QComboBox()
for t in 'uint8', 'float32', 'float64':
self.cb_dtype.addItem(t)
grid.addWidget(self.cb_dtype, 9, 1)
grid.addWidget(qtutil.separator(), 10, 0)
grid.addWidget(qtutil.separator(), 10, 1)
vbox.addLayout(grid)
vbox.addStretch()
self.setLayout(vbox)
self.resize(400, 220)
vbox.addWidget(mue.WarningWidget('Warning. This application has not yet been memory optimized for conversion.'
' We advise you only import files no larger than 1/4 of your memory'))
pb = QPushButton('New Video')
pb.clicked.connect(self.new_video)
vbox.addWidget(pb)
self.listview = QListView()
self.listview.setStyleSheet('QListView::item { height: 26px; }')
self.listview.setSelectionMode(QAbstractItemView.NoSelection)
vbox.addWidget(self.listview)
vbox.addStretch()
self.setLayout(vbox)
def setup_ui(self):
vbox = QVBoxLayout()
## Related to importing Raws
self.setWindowTitle('Import Raw File')
grid = QGridLayout()
grid.addWidget(
QLabel('Set channel and scale factor used for all imported data'),
0, 0)
grid.addWidget(QLabel('Scale Factor:'), 1, 0)
self.scale_factor = QDoubleSpinBox()
self.scale_factor.setSingleStep(0.25)
self.scale_factor.setMinimum(0.25)
self.scale_factor.setMaximum(1.00)
self.scale_factor.setValue(1.0)
grid.addWidget(self.scale_factor, 1, 1)
grid.addWidget(qtutil.separator(), 2, 0)
grid.addWidget(qtutil.separator(), 2, 1)
grid.addWidget(
QLabel('This section only applies to imported raw files.'), 3, 0)
grid.addWidget(
QLabel(
'All imported raws will also be rescaled using the above value'
), 4, 0)
grid.addWidget(QLabel('Width:'), 5, 0)
self.sb_width = QSpinBox()
self.sb_width.setMinimum(1)
self.sb_width.setMaximum(1024)
self.sb_width.setValue(256)
grid.addWidget(self.sb_width, 5, 1)
grid.addWidget(QLabel('Height:'), 6, 0)
self.sb_height = QSpinBox()
self.sb_height.setMinimum(1)
self.sb_height.setMaximum(1024)
self.sb_height.setValue(256)
grid.addWidget(self.sb_height, 6, 1)
grid.addWidget(QLabel('Number of channels in raw:'), 7, 0)
self.sb_channel = QSpinBox()
self.sb_channel.setMinimum(1)
self.sb_channel.setMaximum(3)
self.sb_channel.setValue(3)
grid.addWidget(self.sb_channel, 7, 1)
grid.addWidget(QLabel('Channel in raw to be imported:'), 8, 0)
self.channel = QSpinBox()
self.channel.setMinimum(1)
self.channel.setMaximum(3)
self.channel.setValue(2)
grid.addWidget(self.channel, 8, 1)
grid.addWidget(QLabel('Raw dtype:'), 9, 0)
self.cb_dtype = QComboBox()
for t in 'uint8', 'float32', 'float64':
self.cb_dtype.addItem(t)
grid.addWidget(self.cb_dtype, 9, 1)
grid.addWidget(qtutil.separator(), 10, 0)
grid.addWidget(qtutil.separator(), 10, 1)
vbox.addLayout(grid)
self.setLayout(vbox)
self.resize(400, 220)
vbox.addWidget(
cqt.WarningWidget(
'Warning. This application has not been memory optimized for conversion.'
' We advise you only import raw or tiff files no larger than 1/4 of your memory. '
'e.g. If you have 8GB RAM then we recommend not importing a raw or tiff larger '
'than 2GB. It may or may not freeze your system otherwise.'
'\n \n'
'Press the button below to proceed once all parameters above have been set.'
))
pb = QPushButton('Import Image Stack(s)')
pb.clicked.connect(self.execute_primary_function)
vbox.addWidget(pb)
self.listview = QListView()
self.listview.setStyleSheet('QListView::item { height: 26px; }')
self.listview.setSelectionMode(QAbstractItemView.NoSelection)
vbox.addWidget(self.listview)
vbox.addStretch()
self.setLayout(vbox)
def setup_ui(self):
super().setup_ui()
self.vbox.addWidget(qtutil.separator())
def min_handler(max_of_min):
self.ref_no_min.setMaximum(max_of_min)
def max_handler(min_of_max):
self.ref_no_max.setMinimum(min_of_max)
self.ref_no_min.valueChanged[int].connect(max_handler)
self.ref_no_max.valueChanged[int].connect(min_handler)
hbox = QHBoxLayout()
self.vbox.addWidget(QLabel('Set range averaged over to compute reference frame'))
self.ref_no_min.setMinimum(0)
self.ref_no_min.setMaximum(1400)
self.ref_no_min.setValue(0)
hbox.addWidget(self.ref_no_min)
to = QLabel('to')
to.setAlignment(Qt.AlignCenter)
hbox.addWidget(to)
self.ref_no_max.setMaximum(1000000)
self.ref_no_max.setValue(1000)
hbox.addWidget(self.ref_no_max)
self.vbox.addLayout(hbox)
self.vbox.addWidget(self.ref_button)
self.vbox.addWidget(qtutil.separator())
max_cut_off = 100000
self.vbox.addWidget(QLabel('Choose single frame in stack that is matched with reference frame'))
self.ref_no.setMinimum(0)
self.ref_no.setMaximum(max_cut_off)
self.ref_no.setValue(400)
self.vbox.addWidget(self.ref_no)
hbox = QHBoxLayout()
self.scaling_checkbox.setChecked(False)
hbox.addWidget(self.scaling_checkbox)
self.rotation_checkbox.setChecked(True)
hbox.addWidget(self.rotation_checkbox)
self.vbox.addLayout(hbox)
self.vbox.addWidget(qtutil.separator())
self.vbox.addWidget(self.shift_btn)
self.vbox.addWidget(QLabel('translation vector, rotation angle (in degrees) and isotropic scale factor'))
# self.vbox.addWidget(self.shift_table)
hbox = QHBoxLayout()
hbox.addWidget(QLabel(self.Labels.x_shift_label))
hbox.addWidget(QLabel(self.Labels.y_shift_label))
hbox.addWidget(QLabel(self.Labels.rotation_shift_label))
hbox.addWidget(QLabel(self.Labels.scale_shift_label))
self.vbox.addLayout(hbox)
hbox = QHBoxLayout()
hbox.addWidget(self.tvec_x_sb)
hbox.addWidget(self.tvec_y_sb)
hbox.addWidget(self.rotation_sb)
hbox.addWidget(self.scale_sb)
self.tvec_x_sb.setDecimals(16)
self.tvec_x_sb.setRange(-1000000, 1000000)
self.tvec_y_sb.setDecimals(16)
self.tvec_y_sb.setRange(-1000000, 1000000)
self.rotation_sb.setDecimals(16)
self.rotation_sb.setRange(-1000000, 1000000)
self.scale_sb.setDecimals(16)
self.scale_sb.setRange(-1000000, 1000000)
self.vbox.addLayout(hbox)
self.vbox.addWidget(self.use_shift_checkbox)
self.use_shift_checkbox.setChecked(False)
self.vbox.addWidget(qtutil.separator())
self.vbox.addWidget(self.main_button)
def setup_ui(self):
super().setup_ui()
self.vbox.addWidget(qtutil.separator())
self.vbox.addWidget(QLabel("Matrix Math Functions"))
hbox = QHBoxLayout()
hbox.addWidget(self.avg_mat_pb)
hbox.addWidget(self.sub_mat_pb)
self.vbox.addLayout(hbox)
self.vbox.addWidget(qtutil.separator())
self.vbox.addWidget(cqt.InfoWidget('Note that rois can be dragged and dropped in the list but that the order '
'in which they are *selected* determines how the matrix is ordered. The '
'first selected ROI is placed at the top of the matrix. '
'Dragging and dropping is for convenience so you can organize your desired '
'order and then shift select them from top to bottom to quickly have your '
'desired matrix ordering.'))
hbox = QHBoxLayout()
hbox.addWidget(QLabel('Select ROIs:'))
hbox.addWidget(QLabel('Selected ROIs:'))
self.vbox.addLayout(hbox)
self.roi_list.setSelectionMode(QAbstractItemView.ExtendedSelection)
self.roi_list.setAcceptDrops(True)
self.roi_list.setDragEnabled(True)
self.roi_list.setDropIndicatorShown(True)
self.roi_list.setDragDropMode(QAbstractItemView.InternalMove)
self.roi_list.setDefaultDropAction(Qt.MoveAction)
self.roi_list.setDragDropOverwriteMode(False)
hbox = QHBoxLayout()
hbox.addWidget(self.roi_list)
hbox.addWidget(self.selected_rois_list)
self.vbox.addLayout(hbox)
self.vbox.addWidget(QLabel(self.Labels.colormap_index_label))
# todo: colormap list should be dealt with in a separate script
self.cm_comboBox.addItem("jet")
self.cm_comboBox.addItem("viridis")
self.cm_comboBox.addItem("inferno")
self.cm_comboBox.addItem("plasma")
self.cm_comboBox.addItem("magma")
self.cm_comboBox.addItem("coolwarm")
self.cm_comboBox.addItem("PRGn")
self.cm_comboBox.addItem("seismic")
self.vbox.addWidget(self.cm_comboBox)
hbox = QHBoxLayout()
hbox.addWidget(QLabel(self.Labels.sb_min_label))
hbox.addWidget(QLabel(self.Labels.sb_max_label))
self.vbox.addLayout(hbox)
hbox = QHBoxLayout()
hbox.addWidget(self.min_sb)
hbox.addWidget(self.max_sb)
def min_handler(max_of_min):
self.min_sb.setMaximum(max_of_min)
def max_handler(min_of_max):
self.max_sb.setMinimum(min_of_max)
self.min_sb.valueChanged[float].connect(max_handler)
self.max_sb.valueChanged[float].connect(min_handler)
self.min_sb.setMinimum(-1.0)
self.max_sb.setMaximum(1.0)
self.min_sb.setSingleStep(0.1)
self.max_sb.setSingleStep(0.1)
self.vbox.addLayout(hbox)
self.vbox.addWidget(self.save_pb)
# self.vbox.addWidget(self.load_pb)
self.mask_checkbox.setChecked(True)
self.sem_checkbox.setChecked(False)
self.vbox.addWidget(self.mask_checkbox)
self.vbox.addWidget(self.sem_checkbox)
self.vbox.addWidget(self.cm_pb)
def setup_ui(self):
super().setup_ui()
self.vbox.addWidget(qtutil.separator())
self.vbox.addWidget(QLabel("Matrix Math Functions"))
hbox = QHBoxLayout()
hbox.addWidget(self.avg_mat_pb)
hbox.addWidget(self.sub_mat_pb)
self.vbox.addLayout(hbox)
self.vbox.addWidget(qtutil.separator())
self.vbox.addWidget(cqt.InfoWidget('Note that rois can be dragged and dropped in the list but that the order '
'in which they are *selected* determines how the matrix is ordered. The '
'first selected ROI is placed at the top of the matrix. '
'Dragging and dropping is for convenience so you can organize your desired '
'order and then shift select them from top to bottom to quickly have your '
'desired matrix ordering.'))
hbox = QHBoxLayout()
hbox.addWidget(QLabel('Select ROIs:'))
hbox.addWidget(QLabel('Selected ROIs:'))
self.vbox.addLayout(hbox)
self.roi_list.setSelectionMode(QAbstractItemView.ExtendedSelection)
self.roi_list.setAcceptDrops(True)
self.roi_list.setDragEnabled(True)
self.roi_list.setDropIndicatorShown(True)
self.roi_list.setDragDropMode(QAbstractItemView.InternalMove)
self.roi_list.setDefaultDropAction(Qt.MoveAction)
self.roi_list.setDragDropOverwriteMode(False)
hbox = QHBoxLayout()
hbox.addWidget(self.roi_list)
hbox.addWidget(self.selected_rois_list)
self.vbox.addLayout(hbox)
self.vbox.addWidget(QLabel(self.Labels.colormap_index_label))
# todo: colormap list should be dealt with in a separate script
self.cm_comboBox.addItem("jet")
self.cm_comboBox.addItem("viridis")
self.cm_comboBox.addItem("inferno")
self.cm_comboBox.addItem("plasma")
self.cm_comboBox.addItem("magma")
self.cm_comboBox.addItem("coolwarm")
self.cm_comboBox.addItem("PRGn")
self.cm_comboBox.addItem("seismic")
self.vbox.addWidget(self.cm_comboBox)
hbox = QHBoxLayout()
hbox.addWidget(QLabel(self.Labels.sb_min_label))
hbox.addWidget(QLabel(self.Labels.sb_max_label))
self.vbox.addLayout(hbox)
hbox = QHBoxLayout()
hbox.addWidget(self.min_sb)
hbox.addWidget(self.max_sb)
def min_handler(max_of_min):
self.min_sb.setMaximum(max_of_min)
def max_handler(min_of_max):
self.max_sb.setMinimum(min_of_max)
self.min_sb.valueChanged[float].connect(max_handler)
self.max_sb.valueChanged[float].connect(min_handler)
self.min_sb.setMinimum(-1.0)
self.max_sb.setMaximum(1.0)
self.min_sb.setSingleStep(0.1)
self.max_sb.setSingleStep(0.1)
self.vbox.addLayout(hbox)
self.vbox.addWidget(self.save_pb)
# self.vbox.addWidget(self.load_pb)
self.mask_checkbox.setChecked(True)
self.sem_checkbox.setChecked(False)
self.vbox.addWidget(self.mask_checkbox)
self.vbox.addWidget(self.sem_checkbox)
self.vbox.addWidget(self.cm_pb)
def setup_ui(self):
super().setup_ui()
self.vbox.addWidget(qtutil.separator())
def min_handler(max_of_min):
self.ref_no_min.setMaximum(max_of_min)
def max_handler(min_of_max):
self.ref_no_max.setMinimum(min_of_max)
self.ref_no_min.valueChanged[int].connect(max_handler)
self.ref_no_max.valueChanged[int].connect(min_handler)
hbox = QHBoxLayout()
self.vbox.addWidget(QLabel('Set range averaged over to compute reference frame'))
self.ref_no_min.setMinimum(0)
self.ref_no_min.setMaximum(1400)
self.ref_no_min.setValue(0)
hbox.addWidget(self.ref_no_min)
to = QLabel('to')
to.setAlignment(Qt.AlignCenter)
hbox.addWidget(to)
self.ref_no_max.setMaximum(1000000)
self.ref_no_max.setValue(1000)
hbox.addWidget(self.ref_no_max)
self.vbox.addLayout(hbox)
self.vbox.addWidget(self.ref_button)
self.vbox.addWidget(qtutil.separator())
max_cut_off = 100000
self.vbox.addWidget(QLabel('Choose single frame in stack that is matched with reference frame'))
self.ref_no.setMinimum(0)
self.ref_no.setMaximum(max_cut_off)
self.ref_no.setValue(400)
self.vbox.addWidget(self.ref_no)
hbox = QHBoxLayout()
self.scaling_checkbox.setChecked(False)
hbox.addWidget(self.scaling_checkbox)
self.rotation_checkbox.setChecked(True)
hbox.addWidget(self.rotation_checkbox)
self.vbox.addLayout(hbox)
self.vbox.addWidget(qtutil.separator())
self.vbox.addWidget(self.shift_btn)
self.vbox.addWidget(QLabel('translation vector, rotation angle (in degrees) and isotropic scale factor'))
# self.vbox.addWidget(self.shift_table)
hbox = QHBoxLayout()
hbox.addWidget(QLabel(self.Labels.x_shift_label))
hbox.addWidget(QLabel(self.Labels.y_shift_label))
hbox.addWidget(QLabel(self.Labels.rotation_shift_label))
hbox.addWidget(QLabel(self.Labels.scale_shift_label))
self.vbox.addLayout(hbox)
hbox = QHBoxLayout()
hbox.addWidget(self.tvec_x_sb)
hbox.addWidget(self.tvec_y_sb)
hbox.addWidget(self.rotation_sb)
hbox.addWidget(self.scale_sb)
self.tvec_x_sb.setDecimals(16)
self.tvec_x_sb.setRange(-1000000, 1000000)
self.tvec_y_sb.setDecimals(16)
self.tvec_y_sb.setRange(-1000000, 1000000)
self.rotation_sb.setDecimals(16)
self.rotation_sb.setRange(-1000000, 1000000)
self.scale_sb.setDecimals(16)
self.scale_sb.setRange(-1000000, 1000000)
self.vbox.addLayout(hbox)
self.vbox.addWidget(self.use_shift_checkbox)
self.use_shift_checkbox.setChecked(False)
self.vbox.addWidget(qtutil.separator())
self.vbox.addWidget(self.main_button)