def test_non_coding_large(self):
feats = [(23044091,23044218),(23045020,23045059),(23042605,23042660)]
feats.sort()
search_start = 2304000
search_end = 23045091
cns_size = 30
non_coding_seq = non_coding(feats,cns_size,search_start,search_end)
def test_non_coding_geneends(self):
feats =[(30,33),(38,40),(55,68)]
search_start = 20
search_end = 68
cns_size = 5
non_coding_seq = non_coding(feats,cns_size,search_start,search_end)
expected = [[41, 42, 43, 44, 45, 46, 47, 48, 49], [20, 21, 22, 23, 24]]
self.assertEqual(expected,non_coding_seq)
def test_non_coding(self):
feats =[(30,33),(38,40),(55,60)]
search_start = 0
search_end = 68
cns_size = 5
non_coding_seq = non_coding(feats,cns_size,search_start,search_end)
expected = [[41, 42, 43, 44, 45, 46, 47, 48, 49], [0, 1, 2, 3, 4, 5, 6,
7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23,
24], [61], [62], [63]]
self.assertEqual(expected,non_coding_seq)