def read_observable_reactions(self, data_set_name="reactions"):
"""
Reads back the output of the "reactions" observable
:param data_set_name: The data set name as given in the simulation setup
:return: a tuple which contains an array corresponding to the time as first entry and a list of lists containing
reaction record objects as second entry
"""
time = None
group_path = "readdy/observables/" + data_set_name
with _h5py.File(self._filename, "r") as f:
if not group_path in f:
raise ValueError("The reactions observable was not recorded in the file or recorded under a "
"different name!")
time = f[group_path]["time"][:]
return time, _read_reaction_observable(self._filename, data_set_name)
def read_observable_reactions(self, data_set_name="reactions"):
"""
Reads back the output of the "reactions" observable
:param data_set_name: The data set name as given in the simulation setup
:return: a tuple which contains an array corresponding to the time as first entry and a list of lists containing
reaction record objects as second entry
"""
time = None
group_path = "readdy/observables/" + data_set_name
with _h5py.File(self._filename, "r") as f:
if not group_path in f:
raise ValueError(
"The reactions observable was not recorded in the file or recorded under a "
"different name!")
time = f[group_path]["time"][:]
return time, _read_reaction_observable(self._filename, data_set_name)