def run_workflow_engine_run_command(**kwargs):
"""Click command used to invoke concrete workflow engine adapters."""
workflow_uuid = kwargs.get("workflow_uuid")
workflow_workspace = kwargs.get("workflow_workspace")
def _default_exit_handler(signum, frame):
"""Handle executable exit gracefully."""
if not publisher:
raise Exception(
"Workflow engine graceful exit requires an instance"
"of reana_commons.publisher.WorkflowStatusPublisher")
try:
logging.warning(
"Termination signal {} received. Workflow interrupted ...".
format(signum))
publisher.publish_workflow_status(
workflow_uuid, 3, logs="Workflow exited unexpectedly.")
except Exception:
logging.error(
"Workflow {} could not be stopped gracefully".format(
workflow_uuid), )
try:
signal.signal(signal.SIGTERM, exit_handler
or _default_exit_handler)
publisher = WorkflowStatusPublisher()
rjc_api_client = JobControllerAPIClient("reana-job-controller")
check_connection_to_job_controller()
workflow_engine_run_adapter(publisher, rjc_api_client, **kwargs)
logging.info(
"Workflow {} finished. Files available at {}.".format(
workflow_uuid, workflow_workspace), )
publisher.close()
except Exception as e:
logging.debug(str(e))
if publisher:
publisher.publish_workflow_status(
workflow_uuid,
3,
logs="Workflow exited unexpectedly.\n{e}".format(e=e),
)
else:
logging.error(
"Workflow {} failed but status "
"could not be published causing the workflow to be "
"stuck in running status.".format(workflow_uuid), )
finally:
if publisher:
publisher.close()
from reana_commons.api_client import JobControllerAPIClient
from reana_commons.config import (REANA_LOG_LEVEL, REANA_LOG_FORMAT)
from reana_commons.publisher import WorkflowStatusPublisher
from reana_commons.serial import serial_load
from reana_commons.utils import (build_caching_info_message,
build_progress_message)
from .config import SHARED_VOLUME_PATH
from .utils import (build_job_spec, check_cache, copy_workspace_from_cache,
copy_workspace_to_cache, escape_shell_arg, load_json,
poll_job_status, publish_cache_copy,
publish_job_submission, publish_job_success,
publish_workflow_failure, publish_workflow_start,
sanitize_command)
rjc_api_client = JobControllerAPIClient('reana-job-controller')
@click.command()
@click.option('--workflow-uuid',
required=True,
help='UUID of workflow to be run.')
@click.option('--workflow-workspace',
required=True,
help='Name of workspace in which workflow should run.')
@click.option('--workflow-json',
help='JSON representation of workflow object to be run.',
callback=load_json)
@click.option('--workflow-parameters',
help='JSON representation of parameters received by'
' the workflow.',