def worker():
logging.basicConfig(format='%(asctime)s %(levelname)s %(message)s',
level=logging.INFO)
host = os.getenv("REDIS_SERVICE_HOST", "redis-master")
q = rediswq.RedisWQ(name="jobProduct", host=host)
logging.info("Worker with sessionID %s.", q.sessionID())
logging.info("Initial queue state empty=%s.", q.empty())
host = os.getenv("DASK_SCHEDULER_HOST",
"dask-scheduler.dask.svc.cluster.local")
dask_client = Client(f"{host}:8786")
dc = Datacube()
s3_client = S3Client()
lease_secs = int(os.getenv("JOB_LEASE_PERIOD", "3600"))
while not q.empty():
item = q.lease(lease_secs=lease_secs, block=True, timeout=600)
if item is not None:
itemstr = item.decode("utf=8")
logging.info("Working on %s.", itemstr)
process_job(dc, dask_client, s3_client, itemstr, lease_secs)
q.complete(item)
else:
logging.info("Waiting for work.")
logging.info("Queue empty, exiting.")
def main():
host = os.getenv("REDIS_SERVICE_HOST", "localhost")
password = os.getenv("REDIS_PASSWORD")
queue_name = os.getenv("REDIS_JOBQUEUE_NAME", "analysis-jobs")
tornado.options.parse_command_line()
# test azure connection
app_log.info("Testing database connection...")
db = connect_to_azure_database()
db.close()
app_log.info("Database connection okay!")
q = rediswq.RedisWQ(name=queue_name, host=host, password=password)
app_log.info("Worker with sessionID: " + q.sessionID())
app_log.info(f"Running with lease time {ANALYSIS_LEASE_SECONDS}")
gc_interval = max(ANALYSIS_LEASE_SECONDS // 4, 10)
app_log.info(f"Running garbage collection if idle for {gc_interval}")
while True:
item = q.lease(
lease_secs=ANALYSIS_LEASE_SECONDS,
block=True,
timeout=gc_interval,
)
if item is None:
app_log.debug("Waiting for work")
q.gc()
continue
tic = time.perf_counter()
process_one(q, item)
toc = time.perf_counter()
app_log.info(f"Analysis completed in {int(toc-tic)}s")
def judge(args):
queue_name = args.queue
q = rediswq.RedisWQ(name=queue_name,host="redis")
while not q.empty():
time.sleep(1)
time.sleep(30)
if queue_name == "result":
print('Inference Complete')
def processQueue(host):
print("Process started")
q = rediswq.RedisWQ(name=job, host=host)
print("Worker with sessionID: " + q.sessionID())
print("Initial queue state: empty=" + str(q.empty()))
while not q.empty():
item = q.lease(lease_secs=10, block=True, timeout=2)
if item is not None:
itemstr = item.decode("utf=8")
print("Working on " + itemstr)
time.sleep(10) # Put your actual work here instead of sleep.
q.complete(item)
else:
print("Waiting for work")
print("Process finished")
def bind_redis(self):
for retry_n in range(20):
try:
self.redis_client = Redis(host=self.redis_endpoint)
self.redis_client.delete('test_conn')
logging.info('Connected to Redis!')
except:
logging.warning(
'Failed to connect to Redis. Retrying to connect in {} seconds...'
.format(Fibo(retry_n)))
time.sleep(Fibo(retry_n))
continue
break
else:
raise RedisConnectError()
self.q = rediswq.RedisWQ(name="reconocer", host=self.redis_endpoint)
def run():
# for dev purposes only: bypass redis and process static item.
if DEV_MODE and DEV_ITEM is not None:
print('INFO:Running in dev-mode with: %s' % DEV_ITEM)
print(process_client(DEV_ITEM, None))
return True
# get Redis address from environemnt.
# defaults to 'redis:6379' using the queue 'job'.
redis_host = os.environ.get('REDIS_HOST')
redis_port = os.environ.get('REDIS_PORT', 6379)
redis_queue = os.environ.get('REDIS_QUEUE', 'job')
# falling back to 'redis' is more useful than the
# default 'localhost', especially in k8s clusters.
if redis_host is None:
print('WARNING:You did not provide a Redis host. ' +
'Falling back to "redis".')
redis_host = 'redis'
print("INFO:Trying to reach redis running at %s:%s. Using queue %s." %
(redis_host, redis_port, redis_queue))
queue = rediswq.RedisWQ(name=redis_queue, host=redis_host, port=redis_port)
print("INFO:Connection established")
print("INFO:Worker with sessionID: " + queue.sessionID())
while not queue.empty():
print("INFO:Consulting work queue for the next item.")
object_url = queue.lease(lease_secs=LEASE_SECS, block=True, timeout=2)
item_start = time.time()
if object_url is not None:
print("INFO:Processing item... " + object_url.decode("utf=8"))
if process_client(object_url, queue):
queue.complete(object_url)
time_spent = time.time() - item_start
print(
"INFO:Item completed. Results posted. '{}' seconds to process item."
.format(time_spent))
else:
queue.check_expired_leases()
print("INFO:Waiting for work...")
def bind_redis(self):
for retry_n in range(20):
try:
self.redis_client = Redis(host=self.redis_endpoint)
self.redis_client.delete('test_conn')
logging.info('Connected to Redis!')
except:
logging.warning(
'Failed to connect to Redis. Retrying to connect in {} seconds...'.format(Fibo(retry_n)))
time.sleep(Fibo(retry_n))
continue
break
else:
raise RedisConnectError()
self.q = rediswq.RedisWQ(name=self.work_queue, host=self.redis_endpoint)
logging.info('Worker with sessionID: ' + self.q.sessionID())
logging.info('Initial queue state: empty=' + str(self.q.empty()))
def main():
redis_host = os.environ.get("REDIS_HOST")
if not redis_host:
redis_host = "redis"
q = rediswq.RedisWQ(name="temperature_job", host=redis_host)
print("Worker with sessionID: " + q.sessionID())
print("Initial queue state: empty=" + str(q.empty()))
while not q.empty():
item = q.lease(lease_secs=180, block=True, timeout=2)
if item is not None:
filename = item.decode("utf=8")
print("Aggregating " + filename)
aggregate_temperature_file(filename)
q.complete(item)
else:
print("Waiting for work")
import time
time.sleep(5)
def run():
q = rediswq.RedisWQ(name="job", host=HOST)
enc = codify.Encoder()
APP_KEY = os.getenv("APP_KEY")
print("Worker with sessionID: " + q.sessionID())
print("Initial queue state: empty=" + str(q.empty()))
while not q.empty():
item = q.lease(lease_secs=LEASE_SECS, block=True, timeout=2)
if item is not None:
prefix = enc.encode(APP_KEY, item.decode("utf=8"))
if find(prefix, q):
q.complete(item)
else:
# TODO(clenimar): find a better way to regularly check expired
# leases. Preferably in the Redis queue implementation itself.
q.check_expired_leases()
print("Waiting for work")
continue
print("Queue empty, exiting")
def main():
"""
Workload which:
1. Claims a filename from a Redis Worker Queue
2. Reads the dataset from the file
3. Partially trains the model on the dataset
4. Saves a model checkpoint and generates a report on
the performance of the model after the partial training.
5. Removes the filename from the Redis Worker Queue
6. Repeats 1 through 5 till the Queue is empty
"""
q = rediswq.RedisWQ(name="datasets", host=HOST)
print("Worker with sessionID: " + q.sessionID())
print("Initial queue state: empty=" + str(q.empty()))
checkpoint_path = None
while not q.empty():
# Claim item in Redis Worker Queue
item = q.lease(lease_secs=20, block=True, timeout=2)
if item is not None:
dataset_path = item.decode("utf-8")
print("Processing dataset: " + dataset_path)
training_dataset_path = FILESTORE_PATH + dataset_path
# Initialize the model training manager class
model_trainer = FraudDetectionModelTrainer(
training_dataset_path,
TESTING_DATASET_PATH,
CLASS_LABEL,
checkpoint_path=checkpoint_path,
)
# Train model and save checkpoint + report
checkpoint_path = model_trainer.train_and_save(OUTPUT_DIR)
model_trainer.generate_report(REPORT_PATH)
# Remove item from Redis Worker Queue
q.complete(item)
else:
print("Waiting for work")
print("Queue empty, exiting")
def generate_session_traffic(listname):
q = rediswq.RedisWQ(name=listname, host="redis")
print("Worker with sessionID: " + q.sessionID())
print("Initial queue state: empty=" + str(q.empty()))
while not q.empty():
item = q.lease(lease_secs=5, block=True, timeout=2)
if item is not None:
itemstr = item.decode("utf-8")
print("-----------------------------------------------------")
# print("Working on " + itemstr)
print("Working on " + str(itemstr.split(':')))
domain_value, account_value, max_sess = itemstr.split(
':') # Put your actual work here instead of sleep.
print("domain_value ==> %s" % (domain_value))
print("account_value ==> %s" % (account_value))
print("max_sessions==> %s" % (max_sess))
insert_data(domain_value, account_value, max_sess)
# insert_data(instance,database,domain_value,account_value,max_sess)
q.complete(item)
else:
print("Waiting for work")
print("Queue empty, exiting")
def post(self):
args = parser.parse_args()
session_id = args['session_id']
q = rediswq.RedisWQ(name=session_id, host="20.49.225.191", port="6379")
if not q.empty():
item = q.lease(lease_secs=10, block=True, timeout=2)
if item is not None:
tuple_ = pickle.loads(item)
flow_id = tuple_[0]
task_id = tuple_[1]
flow = openml.flows.get_flow(flow_id,
reinstantiate=True,
strict_version=False)
task = openml.tasks.get_task(task_id)
dataset = task.get_dataset()
tti = task.task_type_id
ep = task.estimation_procedure_id
em = task.evaluation_measure
model = flow.model
X, y, categorical_indicator, attribute_names = dataset.get_data(
dataset_format='array',
target=dataset.default_target_attribute)
model.fit(X, y)
preds = model.predict(X)
score = mean_squared_error(y, preds)
q.complete(item)
return score
import rediswq
import os
import pandas as pd
import json
# TODO: Remove time.sleep() for actual applications
# Config variables
redis_wq_name = os.environ['REDIS_WQ_NAME']
redis_wq_host = os.environ['REDIS_WQ_HOST']
wordlist_file_path = os.environ['WORDLIST_FILE_PATH']
input_datasets_dir_path = os.environ['INPUT_DATASETS_DIR_PATH']
processed_datasets_dir_path = os.environ['PROCESSED_DATASETS_DIR_PATH']
# Initiate Redis
q = rediswq.RedisWQ(name=redis_wq_name, host=redis_wq_host)
print("Worker with sessionID: " + q.sessionID())
print("Initial queue state: empty=" + str(q.empty()))
def wordcount_task(filename, pattern):
input_filename = input_datasets_dir_path + "/" + filename
output_filename = processed_datasets_dir_path + "/" + filename.replace(
"csv", "json")
col_names = ['id', 'date', 'time', 'tweet', 'location']
df = pd.read_csv(input_filename, names=col_names, encoding='utf-8')
df = df[df['tweet'].str.contains(pattern, na=False)]
if not df.empty:
df1 = (df['tweet'].str.split(expand=True).stack().value_counts().
rename_axis('vals').reset_index(name='count'))
df1["count"] = pd.to_numeric(df1["count"])
import os
from scrapy.crawler import CrawlerProcess
from scrapy.utils.project import get_project_settings
import rediswq
if __name__ == '__main__':
q = rediswq.RedisWQ(
name=os.getenv('SCRAPER_QUEUE_NAME'),
host=os.getenv('REDIS_HOST'),
)
crawler_process = CrawlerProcess(get_project_settings())
for spider_name in crawler_process.spider_loader.list():
q.put(spider_name)
import time
import rediswq
import os
import json
import pathlib
try:
session_id = os.environ['SESSION_ID']
except KeyError:
session_id = 'default'
q = rediswq.RedisWQ(name=session_id, host="20.49.225.191", port="6379")
output = {}
while not q.empty():
item = q.lease(lease_secs=10, block=True, timeout=2)
if item is not None:
itemstr = item.decode("utf-8")
output[itemstr] = f"Worked on {itemstr}"
time.sleep(10)
q.complete(item)
print(json.dumps(output))
per_scene_wofs(**loaded_json)
##################
# Job processing #
##################
import os
import logging
import rediswq
import datetime
level = os.getenv("LOGLEVEL", "INFO").upper()
logging.basicConfig(format="%(asctime)s %(levelname)-8s %(name)s %(message)s", datefmt="%Y-%m-%d %H:%M:%S", level=level)
host = os.getenv("REDIS_SERVICE_HOST", "redis-master")
q = rediswq.RedisWQ(name="jobWater", host=host)
logger = logging.getLogger("worker")
logger.info(f"Worker with sessionID: {q.sessionID()}")
logger.info(f"Initial queue state: empty={q.empty()}")
while not q.empty():
item = q.lease(lease_secs=1800, block=True, timeout=600)
if item is not None:
itemstr = item.decode("utf=8")
logger.info(f"Working on {itemstr}")
start = datetime.datetime.now().replace(microsecond=0)
process_scene(itemstr)
q.complete(item)
##################
# Job processing #
##################
import os
import logging
import rediswq
import datetime
level = os.getenv("LOGLEVEL", "INFO").upper()
logging.basicConfig(format="%(asctime)s %(levelname)-8s %(name)s %(message)s",
datefmt="%Y-%m-%d %H:%M:%S",
level=level)
host = os.getenv("REDIS_SERVICE_HOST", "redis-master")
q = rediswq.RedisWQ(name="jobS2L1Cv8", host=host)
logger = logging.getLogger("worker")
logger.info(f"Worker with sessionID: {q.sessionID()}")
logger.info(f"Initial queue state: empty={q.empty()}")
while not q.empty():
item = q.lease(lease_secs=1800, block=True, timeout=600)
if item is not None:
itemstr = item.decode("utf=8")
logger.info(f"Working on {itemstr}")
start = datetime.datetime.now().replace(microsecond=0)
process_scene(itemstr)
q.complete(item)
#!/usr/bin/env python
# From https://kubernetes.io/docs/tasks/job/fine-parallel-processing-work-queue/
import subprocess
import rediswq
import os
host = "redis"
q = rediswq.RedisWQ(name="datacrawler-urls", host="redis")
print("Worker with sessionID: " + q.sessionID())
print("Initial queue state: empty=" + str(q.empty()))
while not q.empty():
item = q.lease(lease_secs=10, block=True, timeout=2)
if item is not None:
itemstr = item.decode("utf=8")
print("Working on " + itemstr)
data = itemstr.split(",")
os.environ["RANK"] = data[0]
os.environ["URL"] = data[1]
return_code = subprocess.call([
"/opt/apt/datacrawler/datacrawler", "--no-sandbox", "--headless",
"--disable-gpu", "--disk-cache-dir=/dev/null",
"--disk-cache-size=1"
])
if return_code == 0:
q.complete(item)
else:
print("Waiting for work")
print("Queue empty, exiting")
#!/usr/bin/env python
import time
import os, sys
import rediswq
host = os.getenv("REDIS_SERVICE_NAME", "redis")
# Uncomment next two lines if you do not have Kube-DNS working.
# import os
# host = os.getenv("REDIS_SERVICE_HOST")
job_number = int(os.getenv("INITIAL_JOB_NUMBER", "1"))
q = rediswq.RedisWQ(name=os.getenv("SUBMIT_QUEUE_NAME", default="archive"), host=host)
print("Worker with sessionID: " + q.sessionID())
print("Initial queue state: empty=" + str(q.empty()))
while True:
item = q.lease(lease_secs=300, block=True, timeout=2)
if item is not None:
itemstr = item.decode("utf-8")
print("Working on " + itemstr)
time.sleep(10) # Put your actual work here instead of sleep.
print(os.popen('python /handle_request.py {:05d} {} > last_job.txt'.format(job_number, itemstr)).read(), file=sys.stderr)
job_number = job_number + 1
q.complete(item)
else:
print("Waiting for work")
while q.empty():
# Sleep while we wait for work.
time.sleep(30)
print("Queue empty, exiting")
import subprocess
host = os.getenv("REDIS_SERVICE_HOST")
queue = os.getenv("REDIS_SERVICE_QUEUE")
# Ensure that our output folder exists
output_dir = '/output/' + queue.replace('-', '/')
if not os.path.exists(output_dir):
os.makedirs(output_dir)
# Set up a basic file logger
logging.basicConfig(level=logging.DEBUG,
format='%(asctime)s - %(levelname)s - %(message)s')
logger = logging
q = rediswq.RedisWQ(name=queue, host=host)
logger.info("Worker started with sessionID: {0}".format(q.sessionID()))
logger.debug("Initial state: empty={0}".format(str(q.empty())))
# Timeout for worker pods in seconds
timeout = 600
start_time = time.time()
next_timeout = start_time + timeout
while not q.empty() and time.time() < next_timeout:
item = q.lease(lease_secs=600, block=True, timeout=2)
if item is not None:
# Read a work item (a bash command) from the queue
command = item.decode("utf=8")
logger.info("Running command: {0}".format(command))
def post(self):
args = parser.parse_args()
ttid = args['ttid']
did = args['did']
target = args['target']
session_id = args['session_id']
predict = args['predict']
predict_file = args['predict_file']
is_csv = False
if (isinstance(predict_file, FileStorage)):
csvfile = pd.read_csv(predict_file.stream)
predict = csvfile
is_csv = True
else:
predict = json.loads(predict)
print(
f"Did: {did}, ttid: {ttid}, target: {target}, predict: {predict}, session_id: {session_id}"
)
if check_exists(active_datasets, (did, target)):
print("Already exists.")
previous = next((item for item in active_datasets
if (item[0] == did and item[1] == target)), None)
score = previous[2]
result = filter(lambda dict: dict['did'] == did, active)
result = list(result)[0]
fid = result['flow']
filename = f"f{fid}-d{did}.pkl"
dataset = openml.datasets.get_dataset(did)
X, y, categorical_indicator, attribute_names = dataset.get_data(
dataset_format='dataframe', target=target)
X = X.dropna()
if is_csv:
to_predict = format_row(X, predict, attribute_names)
else:
to_predict = format_string_row(X, predict, attribute_names)
model = None
with open(filename, 'rb') as f:
model = pickle.load(f)
pred = model.predict(to_predict)
le = preprocessing.LabelEncoder()
le.fit_transform(y)
res = {target: list(le.inverse_transform(pred)), 'score': score}
return res
else:
print("New dataset.")
redis = rediswq.RedisWQ(name=session_id,
host="20.49.225.191",
port="6379")
datasets = client.execute(
gql(close_connections.substitute(did=did, distance=10000)))
tasks_to_check = set()
for dataset in datasets['close_connections']:
tasks = client.execute(
gql(
similar_tasks.substitute(did=dataset['did'],
task_type_id=ttid)))
for t in tasks['similar_tasks']:
tasks_to_check.add(t['tid'])
flows = set()
for t in tasks_to_check:
limit = 1
if ttid == 2:
limit == 100
evals = client.execute(
gql(evaluations.substitute(tid=t, limit=limit)))
for e in evals['evaluations']:
flows.add(e['flow_id'])
print(flows)
jobs = len(flows)
items = zip(list(flows), itertools.repeat(did),
itertools.repeat(target))
pickled = [pickle.dumps(t) for t in list(items)]
redis.add_items(pickled, str(session_id))
set_jobs(jobs, session_id)
top = create_job(jobs)
delete_job("job-wq-2")
dataset = openml.datasets.get_dataset(did)
X, y, categorical_indicator, attribute_names = dataset.get_data(
dataset_format='dataframe', target=target)
X = X.replace(to_replace="?", value=np.nan)
X = X.dropna()
if is_csv:
to_predict = format_row(X, predict, attribute_names)
else:
to_predict = format_string_row(X, predict, attribute_names)
file_, score = create_model(top['flow'], did, target)
model = None
with open(file_, 'rb') as f:
model = pickle.load(f)
pred = model.predict(to_predict)
le = preprocessing.LabelEncoder()
le.fit_transform(y)
try:
res = {
target: list(le.inverse_transform(pred)),
'score': score
}
except ValueError:
res = {target: pred, 'score': score}
active.append(top)
active_datasets.append((did, target, score))
print(res)
return res
##################
# Job processing #
##################
import os
import logging
import rediswq
import datetime
level = os.getenv("LOGLEVEL", "INFO").upper()
logging.basicConfig(format="%(asctime)s %(levelname)-8s %(name)s %(message)s",
datefmt="%Y-%m-%d %H:%M:%S",
level=level)
host = os.getenv("REDIS_SERVICE_HOST", "redis-master")
q = rediswq.RedisWQ(name="jobMOD", host=host)
logger = logging.getLogger("worker")
logger.info(f"Worker with sessionID: {q.sessionID()}")
logger.info(f"Initial queue state: empty={q.empty()}")
while not q.empty():
item = q.lease(lease_secs=1800, block=True, timeout=600)
if item is not None:
itemstr = item.decode("utf=8")
logger.info(f"Working on {itemstr}")
start = datetime.datetime.now().replace(microsecond=0)
process_scene(itemstr)
q.complete(item)
def run_process(serviceConfig, outputDir, Model):
logging.debug('IMAGE:{}'.format(
os.path.basename(os.path.normpath(serviceConfig.image_path))))
if os.path.isdir(outputDir) is False:
os.makedirs(outputDir)
cache_path = os.path.join(outputDir, 'full_results.pkl')
geoImg = GeoImage(serviceConfig.image_path, gap=200)
px, py = geoImg.pixelSize # tuple(px,py)
pixel_size = (px, py)
model = None if serviceConfig.cacheStrategy == Cache.read else Model(
serviceConfig.modelStorePath)
geojson = ContourProcessor(geoImg, outputDir)
readCacheIterator = None
if serviceConfig.cacheStrategy == Cache.read:
with open(cache_path, 'rb') as input:
cachedReadResults = pickle.load(input)
readCacheIterator = iter(cachedReadResults)
cacheWriteResults = []
slice_ids = geoImg.getSplits()
# Cache Read mode
if serviceConfig.cacheStrategy == Cache.read:
for xyOffset in slice_ids:
result = next(readCacheIterator)
# Cache Write mode - Use multi-gpu
if serviceConfig.cacheStrategy == Cache.write:
# k8s redis
# Redis Queues
q = rediswq.RedisWQ(name="job", host="redis")
qresult = rediswq.RedisWQ(name="result", host="redis")
qstat = rediswq.RedisWQ(name="status", host="redis")
# Redis Object
qr = redis.Redis(host='redis', port=6379, decode_responses=True)
print("Worker with sessionID: " + q.sessionID())
print("Initial queue state: empty=" + str(q.empty()))
start_time = time.time()
while not q.empty():
# Remove array suppression (...) so that it doesn't mess up the array to string conversion
import numpy as np
np.set_printoptions(threshold=np.inf)
item = q.lease(lease_secs=60, block=False)
if item is not None:
itemstr = item.decode("utf=8")
itemstr = re.findall(r"\d+\.?\d*", itemstr)
slice_name = "{}_{}.png".format(itemstr[0], itemstr[1])
print("Working on slice :" + slice_name)
im_path = '/mnt/crops/' + slice_name
left, up = itemstr
img = cv2.imread(
im_path) # Read image from crop directory -> left_up.png
result = model.infere(img,
imageId='left-{}_up-{}'.format(left, up))
# # Default -> Creates race condition
# patchGeom = geojson.addPatchBoundary(left, up)
# for feature in result:
# geojson.addFeature(left, up, feature)
# #pod_flag = 1
# q.complete(item)
# Create queue element
q_elem = [left, up, result]
# Push into receiver queue
qr.rpush('result', str(q_elem))
q.complete(item)
else:
print("Waiting...")
end_time = time.time()
print("Queue Empty \nExiting", "\nProcess Time:",
'{}s'.format(end_time - start_time))
if qstat.empty() is False:
ind = qstat.lease(lease_secs=60, block=False)
qstat.complete(ind)
else:
logging.debug('Writing detections to geojson')
from numpy import array, int32 # For eval to work
while not qresult.empty():
res = qresult.lease(lease_secs=60, block=False)
if res is not None:
res2 = res
if sys.version_info[0] == 3:
# Python3
res2 = res.decode("utf=8")
qres_elem = eval(res2)
left, up = eval(qres_elem[0]), eval(qres_elem[1])
result = qres_elem[2] # type list
cacheWriteResults.append(copy.deepcopy(result))
patchGeom = geojson.addPatchBoundary(left, up)
for feature in result:
geojson.addFeature(left, up, feature, patchGeom)
qresult.complete(res)
logging.debug("Caching Detections: {}".format(
len(cacheWriteResults)))
with open(cache_path, 'wb') as output:
pickle.dump(cacheWriteResults, output, pickle.HIGHEST_PROTOCOL)
logging.debug('Geojson Cleanup')
geojson.cleanUp()
if os.path.exists(geojson.cleanedGeojsonPath) is False:
logging.error('Cleaned Geojson not produced')
def post(self):
path = site.USER_SITE
if path not in sys.path:
sys.path.append(path)
args = parser.parse_args()
ttid = args['tid']
did = args['did']
target = args['target']
session_id = args['session_id']
predict = args['predict']
print(active_datasets)
print(active)
if did in active_datasets:
result = filter(lambda dict: dict['did'] == did, active)
result = list(result)[0]
fid = result['flow']
filename = f"f{fid}-d{did}.pkl"
dataset = openml.datasets.get_dataset(did)
X, y, categorical_indicator, attribute_names = dataset.get_data(
dataset_format='dataframe', target=target)
X[target] = y
X = X.dropna()
model = None
with open(filename, 'rb') as f:
model = pickle.load(f)
test = format_test(X, predict, attribute_names)
test = test.drop([target], axis=1)
pred = model.predict(test)
res = {target: pred.tolist()}
return res
else:
active_datasets.append(did)
redis = rediswq.RedisWQ(name=session_id,
host="20.49.225.191",
port="6379")
datasets = client.execute(
gql(close_connections.substitute(did=did, distance=10000)))
tasks_to_check = set()
for dataset in datasets['close_connections']:
tasks = client.execute(
gql(
similar_tasks.substitute(did=dataset['did'],
task_type_id=ttid)))
for t in tasks['similar_tasks']:
tasks_to_check.add(t['tid'])
flows = set()
for t in tasks_to_check:
evals = client.execute(
gql(evaluations.substitute(tid=t, limit=1)))
for e in evals['evaluations']:
flows.add(e['flow_id'])
jobs = len(flows)
items = zip(list(flows), itertools.repeat(did),
itertools.repeat(target))
print(list(flows))
pickled = [pickle.dumps(t) for t in list(items)]
redis.add_items(pickled, str(session_id))
set_jobs(jobs, session_id)
results = create_job(jobs)
max_ = 1
top = {}
for result in results:
if result['flow'] is not None:
if result['score'] < max_ and result['score'] > 0:
max_ = result['score']
top = result
delete_job("job-wq-2")
dataset = openml.datasets.get_dataset(did)
X, y, categorical_indicator, attribute_names = dataset.get_data(
dataset_format='dataframe', target=target)
X[target] = y
X = X.dropna()
active.append(top)
file_ = create_model(top['flow'], did, target)
model = None
with open(file_, 'rb') as f:
model = pickle.load(f)
test = format_test(X, predict, attribute_names)
test = test.drop([target], axis=1)
pred = model.predict(test)
res = {target: pred.tolist()}
return res
'--forgive_threshold',
type=int,
default=3,
help=
'max number of times in a row that you forgive for getting a reason to kill'
)
parser.add_argument('-r',
'--reset',
type=int,
default=False,
help='switch to only reset kill queue to 0')
args = parser.parse_args()
####################
### Connect to Redis Server
q = rediswq.RedisWQ(name=REDIS_SERVER_NAME, host=REDIS_SERVER_IP)
####################
### Reset Kill Queue to 0
if args.reset:
#item = q._db.rpop(q._kill_q_key)
q._db.flushdb() #Delete all keys in the current database
print("Deleted all keys in the current database...")
exit()
else:
pass
####################
### Pull items from Redis Queue for Read + Write
if args.killquick:
# add to the redis q for kill
_ _
| | |
_ __ ___ | | |
| '_ \ / _ \| | |
| |_) | (_) | | |
| .__/ \___/|_|_|
| |
|_|
"""
import constants
import rediswq
import time
PRINT_DELAY = 5
queue = rediswq.RedisWQ(name=constants.JOB_NAME, host=constants.HOST)
def poll(queue, print_delay):
"""
poll checks the number of remaining items in the redis queue and prints the value.
This value is retrieved from the pod named `poll` using `kubectl logs poll`.
:param queue: RedisWQ() - object that has some items in its database
:param print_delay: int - a delay between prints so the output is not overwhelming
:return: None
"""
while not queue.empty():
main_q_size, _ = queue.get_queue_sizes
time.sleep(print_delay)
#!/usr/bin/env python
import time
import rediswq
host = "redis"
q = rediswq.RedisWQ(name="job2", host="redis")
print("Worker with sessionID: " + q.sessionID())
print("Initial queue state: empty=" + str(q.empty()))
while not q.empty():
item = q.lease(lease_secs=10, block=True, timeout=2)
if item is not None:
itemstr = item.decode("utf=8")
print("Working on " + itemstr)
time.sleep(10) # Put your actual work here instead of sleep.
q.complete(item)
else:
print("Waiting for work")
print("Queue empty, exiting")
#!/usr/bin/env python
import time
import os, sys
import rediswq
host = os.getenv("REDIS_SERVICE_NAME", "redis")
# Uncomment next two lines if you do not have Kube-DNS working.
# import os
# host = os.getenv("REDIS_SERVICE_HOST")
job_number = int(os.getenv("INITIAL_JOB_NUMBER", "1"))
q = rediswq.RedisWQ(name=os.getenv("SUBMIT_QUEUE_NAME", default="cleanup"),
host=host)
print("Worker with sessionID: " + q.sessionID())
print("Initial queue state: empty=" + str(q.empty()))
while True:
item = q.lease(lease_secs=300, block=True, timeout=2)
if item is not None:
itemstr = item.decode("utf-8")
print("Working on " + itemstr)
time.sleep(10) # Put your actual work here instead of sleep.
print(os.popen('python /handle_request.py {} > last_job.txt'.format(
itemstr)).read(),
file=sys.stderr)
job_number = job_number + 1
q.complete(item)
else:
print("Waiting for work")
while q.empty():
# Sleep while we wait for work.
#!/usr/bin/env python
import time
import rediswq
# host="redis"
# Uncomment next two lines if you do not have Kube-DNS working.
import os
host = os.getenv("REDIS_SERVICE_HOST")
q = rediswq.RedisWQ(name="job2", host=host)
print("Worker with sessionID: " + q.sessionID())
print("Initial queue state: empty=" + str(q.empty()))
while not q.empty():
item = q.lease(lease_secs=10, block=True, timeout=2)
if item is not None:
itemstr = item.decode("utf-8")
print("Working on " + itemstr)
time.sleep(10) # Put your actual work here instead of sleep.
q.complete(item)
else:
print("Waiting for work")
print("Queue empty, exiting")
#!/usr/bin/env python
import rediswq
import subprocess
import sys
import time
host = "redis"
# Uncomment next two lines if you do not have Kube-DNS working.
# import os
# host = os.getenv("REDIS_SERVICE_HOST")
q = rediswq.RedisWQ(name="antfiles", host="redis")
print("Worker with sessionID: " + q.sessionID())
print("Initial queue state: empty=" + str(q.empty()))
print('', flush=True)
while not q.empty():
item = q.lease(lease_secs=120, block=True, timeout=2)
if item is not None:
filename = item.decode("utf-8")
print()
print("Ant data found")
print("Working on " + filename)
print('', flush=True)
p = subprocess.call(['/usr/local/bin/antscrewcounter', filename],
shell=False,
stdout=sys.stdout,
stderr=sys.stderr)
print('', flush=True)
print("Completed " + filename)