def test_trim_alignment_by_position_right(self):
obs = _trim_alignment(self.fake_ctx.get_action(3),
self.aligned_seqs_fasta, None, None, None, 104)
obs_seqs = {
seq.metadata['id']: str(seq)
for seq in obs.view(DNAIterator)
}
self.assertDictEqual(obs_seqs, self.exp_seqs_only_rev)
def test_trim_alignment_only_rev(self):
obs = _trim_alignment(self.fake_ctx.get_action(3),
self.aligned_seqs_fasta, None,
self.primers_dict["reverse"])
obs_seqs = {
seq.metadata['id']: str(seq)
for seq in obs.view(DNAIterator)
}
self.assertDictEqual(obs_seqs, self.exp_seqs_only_rev)
