async def register_investigator(request):
"""Updates auth information for the authorized account"""
required_fields = ['name']
general.validate_fields(required_fields, request.json)
name = request.json.get('name')
clinic_signer = request.app.config.SIGNER_INVESTIGATOR # .get_public_key().as_hex()
client_txn = consent_transaction.create_investigator_client(
txn_signer=clinic_signer, batch_signer=clinic_signer)
clinic_txn = ehr_transaction.create_investigator(
txn_signer=clinic_signer, batch_signer=clinic_signer, name=name)
batch, batch_id = ehr_transaction.make_batch_and_id(
[client_txn, clinic_txn], clinic_signer)
await security_messaging.add_investigator(request.app.config.VAL_CONN,
request.app.config.TIMEOUT,
[batch])
try:
await security_messaging.check_batch_status(
request.app.config.VAL_CONN, [batch_id])
except (ApiBadRequest, ApiInternalError) as err:
# await auth_query.remove_auth_entry(
# request.app.config.DB_CONN, request.json.get('email'))
raise err
return response.json(body={'status': general.DONE},
headers=general.get_response_headers())
async def request_inform_consent(request, patient_pkey):
"""Updates auth information for the authorized account"""
client_key = general.get_request_key_header(request)
client_signer = general.get_signer(request, client_key)
grant_read_ehr_permission_txn = consent_transaction.request_inform_document_consent(
txn_signer=client_signer,
batch_signer=client_signer,
patient_pkey=patient_pkey)
batch, batch_id = ehr_transaction.make_batch_and_id(
[grant_read_ehr_permission_txn], client_signer)
await security_messaging.request_inform_document_consent(
request.app.config.VAL_CONN, request.app.config.TIMEOUT, [batch],
client_key)
try:
await security_messaging.check_batch_status(
request.app.config.VAL_CONN, [batch_id])
except (ApiBadRequest, ApiInternalError) as err:
# await auth_query.remove_auth_entry(
# request.app.config.DB_CONN, request.json.get('email'))
raise err
return response.json(body={'status': general.DONE},
headers=general.get_response_headers())
async def set_eligible(request):
client_key = general.get_request_key_header(request)
required_fields = ['id', 'eligible']
general.validate_fields(required_fields, request.json)
uid = request.json.get('id')
eligible = bool(request.json.get('eligible'))
client_signer = request.app.config.SIGNER_INVESTIGATOR # .get_public_key().as_hex()
client_txn = ehr_transaction.set_eligible(txn_signer=client_signer,
batch_signer=client_signer,
uid=uid,
eligible=eligible)
batch, batch_id = ehr_transaction.make_batch_and_id([client_txn],
client_signer)
await security_messaging.set_eligible(request.app.config.VAL_CONN,
request.app.config.TIMEOUT, [batch],
client_key)
try:
await security_messaging.check_batch_status(
request.app.config.VAL_CONN, [batch_id])
except (ApiBadRequest, ApiInternalError) as err:
# await auth_query.remove_auth_entry(
# request.app.config.DB_CONN, request.json.get('email'))
raise err
return response.json(body={'status': general.DONE},
headers=general.get_response_headers())
async def revoke_investigator_access(request, investigator_pkey):
"""Updates auth information for the authorized account"""
hospital_key = general.get_request_key_header(request)
client_signer = general.get_signer(request, hospital_key)
revoke_access_to_share_data_txn = consent_transaction.revoke_investigator_access(
txn_signer=client_signer,
batch_signer=client_signer,
dest_pkey=investigator_pkey)
batch, batch_id = ehr_transaction.make_batch_and_id(
[revoke_access_to_share_data_txn], client_signer)
await security_messaging.revoke_investigator_access(
request.app.config.VAL_CONN, request.app.config.TIMEOUT, [batch],
hospital_key)
try:
await security_messaging.check_batch_status(
request.app.config.VAL_CONN, [batch_id])
except (ApiBadRequest, ApiInternalError) as err:
# await auth_query.remove_auth_entry(
# request.app.config.DB_CONN, request.json.get('email'))
raise err
return response.json(body={'status': general.DONE},
headers=general.get_response_headers())
async def register_new_patient(request):
"""Updates auth information for the authorized account"""
# keyfile = common.get_keyfile(request.json.get['signer'])
required_fields = ['name', 'surname']
general.validate_fields(required_fields, request.json)
name = request.json.get('name')
surname = request.json.get('surname')
# private_key = common.get_signer_from_file(keyfile)
# signer = CryptoFactory(request.app.config.CONTEXT).new_signer(private_key)
patient_signer = request.app.config.SIGNER_PATIENT # .get_public_key().as_hex()
client_txn = consent_transaction.create_patient_client(
txn_signer=patient_signer, batch_signer=patient_signer)
# Consent network
batch, batch_id = consent_transaction.make_batch_and_id([client_txn],
patient_signer)
await security_messaging.add_patient(request.app.config.CONSENT_VAL_CONN,
request.app.config.TIMEOUT, [batch])
try:
await security_messaging.check_batch_status(
request.app.config.CONSENT_VAL_CONN, [batch_id])
except (ApiBadRequest, ApiInternalError) as err:
# await auth_query.remove_auth_entry(
# request.app.config.DB_CONN, request.json.get('email'))
raise err
# EHR network
patient_txn = ehr_transaction.create_patient(txn_signer=patient_signer,
batch_signer=patient_signer,
name=name,
surname=surname)
batch, batch_id = ehr_transaction.make_batch_and_id([patient_txn],
patient_signer)
await security_messaging.add_patient(request.app.config.EHR_VAL_CONN,
request.app.config.TIMEOUT, [batch])
try:
await security_messaging.check_batch_status(
request.app.config.EHR_VAL_CONN, [batch_id])
except (ApiBadRequest, ApiInternalError) as err:
# await auth_query.remove_auth_entry(
# request.app.config.DB_CONN, request.json.get('email'))
raise err
return response.json(body={'status': general.DONE},
headers=general.get_response_headers())
async def import_screening_data(request, patient_pkey, ehr_id):
"""Updates auth information for the authorized account"""
investigator_pkey = general.get_request_key_header(request)
client_signer = general.get_signer(request, investigator_pkey)
# LOGGER.debug('request.json: ' + str(request.json))
# data_list = request.json
# data_txns = []
# for data in data_list:
has_signed_inform_consent = \
await security_messaging.has_signed_inform_consent(
request.app.config.VAL_CONN,
patient_pkey,
investigator_pkey)
if not has_signed_inform_consent:
raise ApiBadRequest("No signed inform consent between patient '" +
patient_pkey + "' and investigator '" +
investigator_pkey + "'")
ehr = await security_messaging.get_ehr_by_id(request.app.config.VAL_CONN,
patient_pkey, ehr_id)
data_txn = ehr_transaction.add_data(txn_signer=client_signer,
batch_signer=client_signer,
uid=ehr.id,
height=ehr.height,
weight=ehr.weight,
a1c=ehr.A1C,
fpg=ehr.FPG,
ogtt=ehr.OGTT,
rpgt=ehr.RPGT,
event_time=ehr.event_time)
batch, batch_id = ehr_transaction.make_batch_and_id([data_txn],
client_signer)
await security_messaging.import_screening_data(request.app.config.VAL_CONN,
request.app.config.TIMEOUT,
[batch], investigator_pkey)
try:
await security_messaging.check_batch_status(
request.app.config.VAL_CONN, [batch_id])
except (ApiBadRequest, ApiInternalError) as err:
# await auth_query.remove_auth_entry(
# request.app.config.DB_CONN, request.json.get('email'))
raise err
return response.json(body={'status': general.DONE},
headers=general.get_response_headers())
async def add_ehr(request):
"""Updates auth information for the authorized account"""
hospital_pkey = general.get_request_key_header(request)
required_fields = [
'patient_pkey', 'id', 'height', 'weight', 'A1C', 'FPG', 'OGTT', 'RPGT'
]
general.validate_fields(required_fields, request.json)
patient_pkey = request.json.get('patient_pkey')
ehr_id = request.json.get('id')
height = request.json.get('height')
weight = request.json.get('weight')
a1c = request.json.get('A1C')
fpg = request.json.get('FPG')
ogtt = request.json.get('OGTT')
rpgt = request.json.get('RPGT')
client_signer = general.get_signer(request, hospital_pkey)
ehr_txn = ehr_transaction.add_ehr(txn_signer=client_signer,
batch_signer=client_signer,
uid=ehr_id,
client_pkey=patient_pkey,
height=height,
weight=weight,
a1c=a1c,
fpg=fpg,
ogtt=ogtt,
rpgt=rpgt)
batch, batch_id = ehr_transaction.make_batch_and_id([ehr_txn],
client_signer)
await security_messaging.add_ehr(request.app.config.EHR_VAL_CONN,
request.app.config.CONSENT_VAL_CONN,
request.app.config.TIMEOUT, [batch],
hospital_pkey, patient_pkey)
try:
await security_messaging.check_batch_status(
request.app.config.EHR_VAL_CONN, [batch_id])
except (ApiBadRequest, ApiInternalError) as err:
# await auth_query.remove_auth_entry(
# request.app.config.DB_CONN, request.json.get('email'))
raise err
return response.json(body={'status': general.DONE},
headers=general.get_response_headers())
async def update_data(request):
client_key = general.get_request_key_header(request)
required_fields = ['id', 'height', 'weight', 'A1C', 'FPG', 'OGTT', 'RPGT']
general.validate_fields(required_fields, request.json)
uid = request.json.get('id')
height = request.json.get('height')
weight = request.json.get('weight')
A1C = request.json.get('A1C')
FPG = request.json.get('FPG')
OGTT = request.json.get('OGTT')
RPGT = request.json.get('RPGT')
client_signer = request.app.config.SIGNER_INVESTIGATOR # .get_public_key().as_hex()
client_txn = ehr_transaction.update_data(txn_signer=client_signer,
batch_signer=client_signer,
uid=uid,
height=height,
weight=weight,
a1c=A1C,
fpg=FPG,
ogtt=OGTT,
rpgt=RPGT)
batch, batch_id = ehr_transaction.make_batch_and_id([client_txn],
client_signer)
await security_messaging.update_investigator(request.app.config.VAL_CONN,
request.app.config.TIMEOUT,
[batch], client_key)
try:
await security_messaging.check_batch_status(
request.app.config.VAL_CONN, [batch_id])
except (ApiBadRequest, ApiInternalError) as err:
# await auth_query.remove_auth_entry(
# request.app.config.DB_CONN, request.json.get('email'))
raise err
return response.json(body={'status': general.DONE},
headers=general.get_response_headers())