def test_bam_has_index(self):
"""Check if BAM file has an index."""
# RPF file has an index
has_index = ribocore.bam_has_index(CFG.RIBO_FILE)
self.assertTrue(has_index)
# RNA file doesn't have an index
has_index = ribocore.bam_has_index(CFG.RNA_FILE)
self.assertFalse(has_index)
def test_bam_has_index(self):
"""Check if BAM file has an index."""
# RPF file has an index
has_index = ribocore.bam_has_index(CFG.RIBO_FILE)
self.assertTrue(has_index)
# RNA file doesn't have an index
has_index = ribocore.bam_has_index(CFG.RNA_FILE)
self.assertFalse(has_index)
def test_create_bam_index(self):
"""Index a BAM file."""
ribocore.create_bam_index(CFG.RNA_FILE)
# check if index exists
has_index = ribocore.bam_has_index(CFG.RNA_FILE)
self.assertTrue(has_index)
# remove index
os.remove('{}.bai'.format(CFG.RNA_FILE))
def test_create_bam_index(self):
"""Index a BAM file."""
ribocore.create_bam_index(CFG.RNA_FILE)
# check if index exists
has_index = ribocore.bam_has_index(CFG.RNA_FILE)
self.assertTrue(has_index)
# remove index
os.remove('{}.bai'.format(CFG.RNA_FILE))
