import rrPython
import os
import csv
os.chdir('C:\\RoadRunner\\bin')
function = 'setSelectionList'
rrPython.loadSBMLFromFile('C:\\RoadRunner\\Models\\feedback.xml')
try:
points = rrPython.setSelectionList('time,S1')
if str(points) is not False:
result = 'True'
else:
result = 'False'
except:
result = 'False'
PythonTestResults = open('C:\\RoadRunner\\PythonTestResults.csv','a')
writer = csv.writer(PythonTestResults)
writevar = function + '=' + result
writer.writerow([writevar])
PythonTestResults.close()
import rrPython
import os
import csv
os.chdir("C:\\RoadRunner\\bin")
function = "setSelectionList"
rrPython.loadSBMLFromFile("C:\\RoadRunner\\Models\\feedback.xml")
try:
points = rrPython.setSelectionList("time,S1")
if str(points) is not False:
result = "True"
else:
result = "False"
except:
result = "False"
PythonTestResults = open("C:\\RoadRunner\\PythonTestResults.csv", "a")
writer = csv.writer(PythonTestResults)
writevar = function + "=" + result
writer.writerow([writevar])
PythonTestResults.close()
rrPython.setNumPoints(numberOfPoints)
#if concheck == 1:
# compvalues = rrPython.getCompartmentByIndex()
curtime = ['time']
species = curtime + varlist
#i=0
#pattern = re.compile('[\W_]+')
#for species[i] in species:
# species[i] = pattern.sub('',species[i])#removes non-alphanumeric characters from all variables names. Probably no longer needed.
# i+=1
species = str(species).strip("[]")
species = species.replace("'", "")
species = species.replace(" ", "")
rrPython.setSelectionList(species)
#rrPython.ComputeAndAssignConservationLaws(0)
k = rrPython.simulate()
kk = []
kk = k.split('\n')
############The block of code below was used to multiply values by the compartment
############volume to get results in moles instead of concentration where needed
#iterate = 0
#if concheck == 1:
# for iterate in range(len(kk)):
# iterate2 = 1
# kkelement = kk[iterate]
# for iterate2 in range(len(kkelement)):
# if iterate2 == 0:
import rrPython
import os
import csv
os.chdir('C:\\RoadRunner\\bin')
function = 'setSelectionList'
rrPython.loadSBMLFromFile('C:\\RoadRunner\\Models\\feedback.xml')
try:
points = rrPython.setSelectionList('time,S1')
if str(points) is not False:
result = 'True'
else:
result = 'False'
except:
result = 'False'
PythonTestResults = open('C:\\RoadRunner\\PythonTestResults.csv','a')
writer = csv.writer(PythonTestResults)
writevar = function + '=' + result
writer.writerow([writevar])
PythonTestResults.close()
rrPython.setNumPoints(numberOfPoints)
#if concheck == 1:
# compvalues = rrPython.getCompartmentByIndex()
curtime = ['time']
species = curtime + varlist
#i=0
#pattern = re.compile('[\W_]+')
#for species[i] in species:
# species[i] = pattern.sub('',species[i])#removes non-alphanumeric characters from all variables names. Probably no longer needed.
# i+=1
species = str(species).strip("[]")
species = species.replace("'", "")
species = species.replace(" ", "")
rrPython.setSelectionList(species)
#rrPython.ComputeAndAssignConservationLaws(0)
k = rrPython.simulate()
kk = []
kk = k.split('\n')
############The block of code below was used to multiply values by the compartment
############volume to get results in moles instead of concentration where needed
#iterate = 0
#if concheck == 1:
# for iterate in range(len(kk)):
# iterate2 = 1
# kkelement = kk[iterate]
# for iterate2 in range(len(kkelement)):
# if iterate2 == 0: