def test_build(self):
tested = MdsolDerivationDef(
"AGE",
variable_oid="VAROID",
field_oid="FIELDOID",
form_oid="MyForm",
folder_oid="MyFolder",
record_position=0,
form_repeat_number=2,
folder_repeat_number=3,
logical_record_position="MaxBySubject",
all_variables_in_fields=True,
all_variables_in_folders=True,
)
doc = obj_to_doc(tested)
tested << MdsolDerivationStep(function=StepType.Age)
doc = obj_to_doc(tested)
self.assertEqual("mdsol:DerivationDef", doc.tag)
self.assertEqual("TRUE", doc.attrib["Active"])
self.assertEqual("AGE", doc.attrib["OID"])
self.assertEqual("FALSE", doc.attrib["NeedsRetesting"])
self.assertEqual("FALSE", doc.attrib["BypassDuringMigration"])
self.assertEqual("TRUE", doc.attrib["AllVariablesInFolders"])
self.assertEqual("TRUE", doc.attrib["AllVariablesInFields"])
self.assertEqual("VAROID", doc.attrib["VariableOID"])
self.assertEqual("FIELDOID", doc.attrib["FieldOID"])
self.assertEqual("MyForm", doc.attrib["FormOID"])
self.assertEqual("MyFolder", doc.attrib["FolderOID"])
self.assertEqual("0", doc.attrib["RecordPosition"])
self.assertEqual("2", doc.attrib["FormRepeatNumber"])
self.assertEqual("3", doc.attrib["FolderRepeatNumber"])
self.assertEqual("MaxBySubject", doc.attrib["LogicalRecordPosition"])
self.assertEqual("mdsol:DerivationStep", doc.getchildren()[0].tag)
def test_builder(self):
"""XML produced"""
tested = Decode()
tested << TranslatedText("Yes")
doc = obj_to_doc(tested)
self.assertEqual("Decode", doc.tag)
self.assertEqual("TranslatedText", doc.getchildren()[0].tag)
def test_build(self):
tested = MdsolCheckAction(
field_oid="Field",
variable_oid="TheVAR",
form_oid="The Form",
form_repeat_number=1,
folder_oid="The Folder",
folder_repeat_number=2,
record_position=3,
check_action_type=ActionType.SetDataPoint,
check_string="CString", # Knowing which of these to use for each action type is
check_script="CScript", # the trick. Best to look in an Architect Loader Spreadsheet
check_options="COptions",
) # to get an idea
doc = obj_to_doc(tested)
self.assertEqual("mdsol:CheckAction", doc.tag)
self.assertEqual("The Folder", doc.attrib["FolderOID"])
self.assertEqual("The Form", doc.attrib["FormOID"])
self.assertEqual("Field", doc.attrib["FieldOID"])
self.assertEqual("TheVAR", doc.attrib["VariableOID"])
self.assertEqual("1", doc.attrib["FormRepeatNumber"])
self.assertEqual("2", doc.attrib["FolderRepeatNumber"])
self.assertEqual("3", doc.attrib["RecordPosition"])
self.assertEqual("CString", doc.attrib["String"])
self.assertEqual("CScript", doc.attrib["Script"])
self.assertEqual("COptions", doc.attrib["Options"])
self.assertEqual(ActionType.SetDataPoint.value, doc.attrib["Type"])
def test_builder(self):
"""XML produced"""
tested = TranslatedText("A test", lang="en")
doc = obj_to_doc(tested)
self.assertEqual(doc.tag, "TranslatedText")
self.assertEqual("en", doc.attrib["xml:lang"])
self.assertEqual("A test", doc.text)
def test_build_datastep(self):
tested = MdsolDerivationStep(
variable_oid="VAROID",
field_oid="FIELDOID",
form_oid="VFORM",
folder_oid="MyFolder",
record_position=0,
form_repeat_number=2,
folder_repeat_number=3,
logical_record_position="MaxBySubject",
)
doc = obj_to_doc(tested)
self.assertEqual("mdsol:DerivationStep", doc.tag)
self.assertEqual("VAROID", doc.attrib["VariableOID"])
self.assertEqual("FIELDOID", doc.attrib["FieldOID"])
self.assertEqual("VFORM", doc.attrib["FormOID"])
self.assertEqual("MyFolder", doc.attrib["FolderOID"])
self.assertEqual("0", doc.attrib["RecordPosition"])
self.assertEqual("2", doc.attrib["FormRepeatNumber"])
self.assertEqual("3", doc.attrib["FolderRepeatNumber"])
self.assertEqual("MaxBySubject", doc.attrib["LogicalRecordPosition"])
# No data format param
self.assertEqual("", doc.attrib.get("DataFormat", ""))
# No function param
self.assertEqual("", doc.attrib.get("Function", ""))
def test_build(self):
tested = MdsolLabelRef("OID1", 1)
doc = obj_to_doc(tested)
self.assertEqual(doc.tag, "mdsol:LabelRef")
self.assertEqual("OID1", doc.attrib["LabelOID"])
self.assertEqual("1", doc.attrib["OrderNumber"])
def test_build_function(self):
tested = MdsolDerivationStep(function=StepType.Add)
doc = obj_to_doc(tested)
self.assertEqual("mdsol:DerivationStep", doc.tag)
self.assertEqual(StepType.Add.value, doc.attrib["Function"])
# No data format param
self.assertEqual("", doc.attrib.get("DataFormat", ""))
def test_builder(self):
tested = ItemGroupRef("ItemGroup1", 1, mandatory=True)
doc = obj_to_doc(tested)
self.assertEqual(doc.tag, "ItemGroupRef")
self.assertEqual("ItemGroup1", doc.attrib["ItemGroupOID"])
self.assertEqual("1", doc.attrib["OrderNumber"])
self.assertEqual("Yes", doc.attrib["Mandatory"])
def test_builder_no_lang(self):
"""XML produced when no lang is provided"""
tested = TranslatedText("A test")
doc = obj_to_doc(tested)
self.assertEqual(doc.tag, "TranslatedText")
self.assertEqual("", doc.get("xml:lang", ""))
self.assertEqual("A test", doc.text)
def test_builder(self):
tested = StudyEventDef(
"OID",
"Name",
False,
StudyEventDef.SCHEDULED,
category="Test Cat",
access_days=1,
start_win_days=2,
target_days=3,
end_win_days=4,
overdue_days=5,
close_days=6,
)
tested << FormRef("FORMOID", 1, False)
doc = obj_to_doc(tested)
self.assertEqual(doc.tag, "StudyEventDef")
self.assertEqual("OID", doc.attrib["OID"])
self.assertEqual("Name", doc.attrib["Name"])
self.assertEqual("Scheduled", doc.attrib["Type"])
self.assertEqual("Test Cat", doc.attrib["Category"])
self.assertEqual("1", doc.attrib["mdsol:AccessDays"])
self.assertEqual("2", doc.attrib["mdsol:StartWinDays"])
self.assertEqual("3", doc.attrib["mdsol:TargetDays"])
self.assertEqual("4", doc.attrib["mdsol:EndWinDays"])
self.assertEqual("5", doc.attrib["mdsol:OverDueDays"])
self.assertEqual("6", doc.attrib["mdsol:CloseDays"])
self.assertEqual("FormRef", doc.getchildren()[0].tag)
def test_build(self):
tested = ItemGroupDef(
"DM",
"Demography",
repeating=True,
is_reference_data=True,
sas_dataset_name="DMSAS",
domain="TESTDOMAIN",
origin="TESTORIGIN",
role="TESTROLE",
purpose="TESTPURPOSE",
comment="A comment",
)
tested << ItemRef("OID1", 1)
tested << MdsolLabelRef("LABEL1", 2)
doc = obj_to_doc(tested)
self.assertEqual(doc.tag, "ItemGroupDef")
self.assertEqual("DM", doc.attrib["OID"])
self.assertEqual("Yes", doc.attrib["Repeating"])
self.assertEqual("Yes", doc.attrib["IsReferenceData"])
self.assertEqual("Demography", doc.attrib["Name"])
self.assertEqual("DMSAS", doc.attrib["SASDatasetName"])
self.assertEqual("TESTDOMAIN", doc.attrib["Domain"])
self.assertEqual("TESTORIGIN", doc.attrib["Origin"])
self.assertEqual("TESTROLE", doc.attrib["Role"])
self.assertEqual("TESTPURPOSE", doc.attrib["Purpose"])
self.assertEqual("A comment", doc.attrib["Comment"])
self.assertEqual("ItemRef", doc.getchildren()[0].tag)
self.assertEqual("mdsol:LabelRef", doc.getchildren()[1].tag)
def test_lang_default(self):
tested = MdsolHeaderText("Content", "en")
self.assertEqual("en", tested.lang)
doc = obj_to_doc(tested)
self.assertEqual("mdsol:HeaderText", doc.tag)
self.assertEqual("Content", doc.text)
self.assertEqual("en", doc.attrib["xml:lang"])
def test_build(self):
tested = MdsolDerivationStep(data_format="$1", value="1")
doc = obj_to_doc(tested)
self.assertEqual("mdsol:DerivationStep", doc.tag)
self.assertEqual("$1", doc.attrib["DataFormat"])
self.assertEqual("1", doc.attrib["Value"])
# No function param
self.assertEqual("", doc.attrib.get("Function", ""))
def test_build_custom_function(self):
tested = MdsolDerivationStep(custom_function="AlwaysTrue*")
doc = obj_to_doc(tested)
self.assertEqual("mdsol:DerivationStep", doc.tag)
self.assertEqual("AlwaysTrue*", doc.attrib["CustomFunction"])
# No data format param
self.assertEqual("", doc.attrib.get("DataFormat", ""))
# No function param
self.assertEqual("", doc.attrib.get("Function", ""))
def test_builder(self):
"""XML produced"""
tested = CodeList("CL_YN", "YesNo", DataType.String, sas_format_name="YESNO_CL")
tested << CodeListItem("Y")
doc = obj_to_doc(tested)
self.assertEqual("CodeList", doc.tag)
self.assertEqual(DataType.String.value, doc.attrib["DataType"])
self.assertEqual("YESNO_CL", doc.attrib["SASFormatName"])
self.assertEqual("CodeListItem", doc.getchildren()[0].tag)
def test_builder_basic(self):
"""XML produced"""
tested = CodeListItem("Y")
tested << Decode()
doc = obj_to_doc(tested)
self.assertEqual("CodeListItem", doc.tag)
self.assertEqual("", doc.get("mdsol:Specify", ""))
self.assertEqual("", doc.get("mdsol:OrderNumber", ""))
self.assertEqual("Y", doc.attrib["CodedValue"])
self.assertEqual("Decode", doc.getchildren()[0].tag)
def test_builder_order_specify(self):
"""XML produced with optional params set"""
tested = CodeListItem("Y", order_number=1, specify=True)
tested << Decode()
doc = obj_to_doc(tested)
self.assertEqual("CodeListItem", doc.tag)
self.assertEqual("Yes", doc.attrib["mdsol:Specify"])
self.assertEqual("1", doc.attrib["mdsol:OrderNumber"])
self.assertEqual("Y", doc.attrib["CodedValue"])
self.assertEqual("Decode", doc.getchildren()[0].tag)
def test_build(self):
self.tested << TranslatedText("Please answer all questions")
self.tested << MdsolViewRestriction("DM")
doc = obj_to_doc(self.tested)
self.assertEqual(doc.tag, "mdsol:LabelDef")
self.assertEqual("L_AGE", doc.attrib["OID"])
self.assertEqual("Age Label", doc.attrib["Name"])
self.assertEqual("4", doc.attrib["FieldNumber"])
self.assertEqual("TranslatedText", doc.getchildren()[0].tag)
self.assertEqual("mdsol:ViewRestriction", doc.getchildren()[1].tag)
def test_builder(self):
"""XML produced"""
tested = Study("oid1", "GlobalLibrary Volume")(
GlobalVariables("MY_TEST_PROJECT"), BasicDefinitions(), MetaDataVersion("OID", "NAME")
)
doc = obj_to_doc(tested)
self.assertEqual(doc.tag, "Study")
self.assertEqual(doc.attrib["mdsol:ProjectType"], "GlobalLibrary Volume")
self.assertEqual(doc.getchildren()[0].tag, "GlobalVariables")
self.assertEqual(doc.getchildren()[1].tag, "BasicDefinitions")
self.assertEqual(doc.getchildren()[2].tag, "MetaDataVersion")
def test_build(self):
self.tested = RangeCheck(comparator=RangeCheckComparatorType.GreaterThanEqualTo, soft_hard=RangeCheckType.Soft)
self.tested << CheckValue(0)
self.tested << MeasurementUnitRef("kg")
doc = obj_to_doc(self.tested)
self.assertEqual("RangeCheck", doc.tag)
self.assertEqual("Soft", doc.attrib["SoftHard"])
self.assertEqual("GE", doc.attrib["Comparator"])
self.assertEqual("CheckValue", doc.getchildren()[0].tag)
self.assertEqual("MeasurementUnitRef", doc.getchildren()[1].tag)
def test_build(self):
self.tested << Question()(TranslatedText("How do you feel today?"))
self.tested << CodeListRef("SCALE_1")
self.tested << MeasurementUnitRef("Years")
self.tested << MdsolHelpText("en", "Content of help")
self.tested << MdsolViewRestriction("DM")
self.tested << MdsolEntryRestriction("CRA")
self.tested << MdsolHeaderText("YRS")
self.tested << MdsolReviewGroup("CRA")
self.tested << RangeCheck(RangeCheckComparatorType.LessThanEqualTo, RangeCheckType.Soft)
doc = obj_to_doc(self.tested)
self.assertEqual(doc.tag, "ItemDef")
self.assertEqual("I_AGE", doc.attrib["OID"])
self.assertEqual("Age", doc.attrib["Name"])
self.assertEqual("Yes", doc.attrib["mdsol:Active"])
self.assertEqual("integer", doc.attrib["DataType"])
self.assertEqual("3", doc.attrib["Length"])
self.assertEqual("Text", doc.attrib["mdsol:ControlType"])
self.assertEqual("3", doc.attrib["SignificantDigits"])
self.assertEqual("SAGE", doc.attrib["SASFieldName"])
self.assertEqual("SVARNAME", doc.attrib["SDSVarName"])
self.assertEqual("AGE_YRS", doc.attrib["mdsol:SASLabel"])
self.assertEqual("3.0", doc.attrib["mdsol:SASFormat"])
self.assertEqual("A comment", doc.attrib["Comment"])
self.assertEqual("An origin", doc.attrib["Origin"])
self.assertEqual("No", doc.attrib["mdsol:QueryFutureDate"])
self.assertEqual("Yes", doc.attrib["mdsol:Visible"])
self.assertEqual("Yes", doc.attrib["mdsol:TranslationRequired"])
self.assertEqual("Yes", doc.attrib["mdsol:SourceDocument"])
self.assertEqual("No", doc.attrib["mdsol:OtherVisits"])
self.assertEqual("Yes", doc.attrib["mdsol:SourceDocument"])
self.assertEqual("Yes", doc.attrib["mdsol:QueryNonConformance"])
self.assertEqual("No", doc.attrib["mdsol:CanSetItemGroupDate"])
self.assertEqual("No", doc.attrib["mdsol:CanSetFormDate"])
self.assertEqual("No", doc.attrib["mdsol:CanSetStudyEventDate"])
self.assertEqual("No", doc.attrib["mdsol:CanSetSubjectDate"])
self.assertEqual("Yes", doc.attrib["mdsol:VisualVerify"])
self.assertEqual("Yes", doc.attrib["mdsol:DoesNotBreakSignature"])
self.assertEqual("SOMETHING_DIFFERENT", doc.attrib["mdsol:VariableOID"])
self.assertEqual("jpg", doc.attrib["mdsol:AcceptableFileExtensions"])
self.assertEqual("99", doc.attrib["mdsol:DefaultValue"])
self.assertEqual("mmm yy dd", doc.attrib["mdsol:DateTimeFormat"])
self.assertEqual("10", doc.attrib["mdsol:FieldNumber"])
self.assertEqual("Question", doc.getchildren()[0].tag)
self.assertEqual("CodeListRef", doc.getchildren()[1].tag)
self.assertEqual("MeasurementUnitRef", doc.getchildren()[2].tag)
self.assertEqual("RangeCheck", doc.getchildren()[3].tag)
self.assertEqual("mdsol:HeaderText", doc.getchildren()[4].tag)
self.assertEqual("mdsol:ViewRestriction", doc.getchildren()[5].tag)
self.assertEqual("mdsol:EntryRestriction", doc.getchildren()[6].tag)
self.assertEqual("mdsol:HelpText", doc.getchildren()[7].tag)
self.assertEqual("mdsol:ReviewGroup", doc.getchildren()[8].tag)
def test_builder(self):
"""XML produced"""
tested = GlobalVariables("project_name", description="A description")
doc = obj_to_doc(tested)
self.assertEqual(doc.tag, "GlobalVariables")
self.assertEqual(doc.getchildren()[0].tag, "StudyName")
self.assertEqual("project_name", doc.getchildren()[0].text)
self.assertEqual(doc.getchildren()[1].tag, "StudyDescription")
self.assertEqual("A description", doc.getchildren()[1].text)
self.assertEqual(doc.getchildren()[2].tag, "ProtocolName")
self.assertEqual("project_name", doc.getchildren()[2].text)
def test_build(self):
tested = MdsolEditCheckDef("CHECK1")
tested << MdsolCheckStep(data_format="$1", static_value="1")
tested << MdsolCheckAction()
doc = obj_to_doc(tested)
self.assertEqual("mdsol:EditCheckDef", doc.tag)
self.assertEqual("TRUE", doc.attrib["Active"])
self.assertEqual("CHECK1", doc.attrib["OID"])
self.assertEqual("FALSE", doc.attrib["NeedsRetesting"])
self.assertEqual("FALSE", doc.attrib["BypassDuringMigration"])
self.assertEqual("mdsol:CheckStep", doc.getchildren()[0].tag)
self.assertEqual("mdsol:CheckAction", doc.getchildren()[1].tag)
def test_build(self):
tested = ItemRef(
"OID1", 1, key_sequence=3, imputation_method_oid="IMPUTE1", role="AROLE", role_codelist_oid="ROLEX"
)
tested << MdsolAttribute("Namespace", "Name", "Value")
tested << MdsolAttribute("Namespace2", "Name2", "Value2")
doc = obj_to_doc(tested)
self.assertEqual(doc.tag, "ItemRef")
self.assertEqual("OID1", doc.attrib["ItemOID"])
self.assertEqual("1", doc.attrib["OrderNumber"])
self.assertEqual("3", doc.attrib["KeySequence"])
self.assertEqual("IMPUTE1", doc.attrib["ImputationMethodOID"])
self.assertEqual("AROLE", doc.attrib["Role"])
self.assertEqual("ROLEX", doc.attrib["RoleCodeListOID"])
self.assertEqual("mdsol:Attribute", doc.getchildren()[0].tag)
self.assertEqual("mdsol:Attribute", doc.getchildren()[1].tag)
def test_builder(self):
"""XML produced"""
tested = MetaDataVersion(
"OID",
"NAME",
description="A description",
primary_formoid="DM",
default_matrix_oid="DEFAULT",
signature_prompt="I confirm.",
delete_existing=True,
)
tested << Protocol()
tested << StudyEventDef("OID", "Name", False, StudyEventDef.SCHEDULED)
tested << FormDef("FORM_OID", "FORM_Name")
tested << ItemGroupDef("IG_DEMO", "Demography")
tested << ItemDef("ID_AGE", "Demography", DataType.Integer, 3)
tested << CodeList("C_YESNO", "Yes No", DataType.String)
tested << MdsolLabelDef("LABEL1", "first label")
tested << MdsolConfirmationMessage("Form has been submitted!")
tested << MdsolCustomFunctionDef("AlwaysTrue*", "return true;")
tested << MdsolEditCheckDef("DM01")
tested << MdsolDerivationDef("AGE")
doc = obj_to_doc(tested)
self.assertEqual(doc.tag, "MetaDataVersion")
self.assertEqual("OID", doc.attrib["OID"])
self.assertEqual("NAME", doc.attrib["Name"])
self.assertEqual("A description", doc.attrib["Description"])
self.assertEqual("DEFAULT", doc.attrib["mdsol:DefaultMatrixOID"])
self.assertEqual("I confirm.", doc.attrib["mdsol:SignaturePrompt"])
self.assertEqual("DM", doc.attrib["mdsol:PrimaryFormOID"])
self.assertEqual("Yes", doc.attrib["mdsol:DeleteExisting"])
self.assertEqual("Protocol", doc.getchildren()[0].tag)
self.assertEqual("StudyEventDef", doc.getchildren()[1].tag)
self.assertEqual("FormDef", doc.getchildren()[2].tag)
self.assertEqual("ItemGroupDef", doc.getchildren()[3].tag)
self.assertEqual("ItemDef", doc.getchildren()[4].tag)
self.assertEqual("CodeList", doc.getchildren()[5].tag)
self.assertEqual("mdsol:ConfirmationMessage", doc.getchildren()[6].tag)
self.assertEqual("mdsol:LabelDef", doc.getchildren()[7].tag)
self.assertEqual("mdsol:EditCheckDef", doc.getchildren()[8].tag)
self.assertEqual("mdsol:DerivationDef", doc.getchildren()[9].tag)
self.assertEqual("mdsol:CustomFunctionDef", doc.getchildren()[10].tag)
def test_builder(self):
tested = FormDef(
"DM", "Demog", repeating=True, order_number=2, link_form_oid="FRM1", link_study_event_oid="EVT1"
)
tested << ItemGroupRef("ItemGroup1", 1)
tested << MdsolHelpText("en", "This is a help text")
tested << MdsolViewRestriction("DM")
tested << MdsolEntryRestriction("CRA")
doc = obj_to_doc(tested)
self.assertEqual(doc.tag, "FormDef")
self.assertEqual("DM", doc.attrib["OID"])
self.assertEqual("Demog", doc.attrib["Name"])
self.assertEqual("Yes", doc.attrib["Repeating"])
self.assertEqual("2", doc.attrib["mdsol:OrderNumber"])
# Would not see LinkFormOID and LinkStudyEventOID together, they are mutually exclusive. Just for coverage.
self.assertEqual("FRM1", doc.attrib["mdsol:LinkFormOID"])
self.assertEqual("EVT1", doc.attrib["mdsol:LinkStudyEventOID"])
self.assertEqual("ItemGroupRef", doc.getchildren()[0].tag)
self.assertEqual("mdsol:HelpText", doc.getchildren()[1].tag)
self.assertEqual("mdsol:ViewRestriction", doc.getchildren()[2].tag)
self.assertEqual("mdsol:EntryRestriction", doc.getchildren()[3].tag)
def test_builder(self):
"""XML produced"""
tested = BasicDefinitions()(MeasurementUnit("MU_OID", "MUNAME"))
doc = obj_to_doc(tested)
self.assertEqual(doc.tag, "BasicDefinitions")
self.assertEqual(doc.getchildren()[0].tag, "MeasurementUnit")
def test_builder(self):
"""XML produced"""
tested = MeasurementUnit("MU_OID", "MU_NAME")(Symbol())
doc = obj_to_doc(tested)
self.assertEqual(doc.tag, "MeasurementUnit")
self.assertEqual(doc.getchildren()[0].tag, "Symbol")
def test_build(self):
cm = MdsolConfirmationMessage("Form saved.")
doc = obj_to_doc(cm)
self.assertEqual("mdsol:ConfirmationMessage", doc.tag)
self.assertEqual("Form saved.", doc.text)
def test_lang_set(self):
cm = MdsolConfirmationMessage("Form saved.", lang="en")
doc = obj_to_doc(cm)
self.assertEqual("en", doc.attrib["xml:lang"])