def test_concept2_readonly(self):
"""Test that the .concept2 property is immutable."""
relObj = random.sample(self.relObjects, 1)
drugsFile = StringIO(drugsData)
drugObj = rxnorm.Drug(drugsFile.readline())
self.assertRaises(AttributeError, relObj.__setattr__, 'concept2',
drugObj)
def make_drugObjects(self, drugsFile):
"""Helper function that initializes a Drug object from each line in
the file object drugsFile."""
drugObjects = []
for drugLine in drugsFile:
if drugLine.strip() == '':
continue
d = rxnorm.Drug(drugLine)
drugObjects.append(d)
return drugObjects
types[st.CUI] = set([st.semtype])
count += 1
display_count(count)
print >> sys.stderr
print >> sys.stderr, "Reading concepts"
conso_filename = os.path.join(sys.argv[1], "MRCONSO.RRF")
conso_file = open(conso_filename, "rU")
concepts = {}
count = 0
for line in conso_file:
if 'RXNORM' not in line:
continue
c = rxnorm.Drug(line)
c.semtypes = types[c.CUI]
concepts[c.CUI] = c
count += 1
display_count(count)
print >> sys.stderr, "\nForgetting semantic type db"
del types
print >> sys.stderr, "Reading relations"
rel_filename = os.path.join(sys.argv[1], "MRREL.RRF")
rel_file = open(rel_filename, "rU")
count = 0
relations = []
for line in rel_file: