def __init__(self,config,ds,run,nsample,thin,burnin,levels=-1,*args,**kwargs):
Sample.__init__(self,config,ds,run,nsample,thin,burnin,levels,*args,**kwargs)
self.levels=self.config.levels-1
kern = self.__dict__['k%d'%(self.levels+2)]
self.yKernelOld = self.yKernel
self.yKernel = Addition(self.yKernel,kern)
del self.kernels[-1]
kwargs = {}
kwargs['yKernel'] = self.yKernel
for i,k in enumerate(self.kernels):
kwargs['k%d'%(i+1)] = k
self.freeze = Freezer(model=self.model,**kwargs)
self.startSample = self.freeze.freeze()
def __init__(self, ID, Output_geno, Code_drug, Active_score, Drug_action, Low_coverage, Range, Gene_KB, low_coverage_flag):
self.ID = ID
self.whole_genotype = self.get_whole_genotype(Output_geno)
self.standard_pass, self.cyp2d6_pass = self.standard_check()
if low_coverage_flag:
Sample.__init__(self, ID, Output_geno, Code_drug, Active_score, Drug_action, Low_coverage, Range, Gene_KB)
