def _get_or_create_sampleSets(request, user):
queryDict = request.POST
logger.info("views._get_or_create_sampleSets POST queryDict=%s" %(queryDict))
sampleSet_ids = []
new_sampleSetName = queryDict.get("new_sampleSetName", "").strip()
new_sampleSetDesc = queryDict.get("new_sampleSetDescription", "").strip()
new_sampleSet_groupType_id = queryDict.get("new_sampleSet_groupType", None)
selected_sampleSet_ids = queryDict.getlist("sampleset", [])
#logger.debug("views_helper._get_or_create_sampleSets selected_sampleSet_ids=%s" %(selected_sampleSet_ids))
if selected_sampleSet_ids:
selected_sampleSet_ids = [ssi.encode('utf8') for ssi in selected_sampleSet_ids]
if (selected_sampleSet_ids):
sampleSet_ids.extend(selected_sampleSet_ids)
#logger.debug("views_helper._get_or_create_sampleSets sampleSet_ids=%s" %(sampleSet_ids))
#nullify group type if user does not specify a group type
if new_sampleSet_groupType_id == '0' or new_sampleSet_groupType_id == 0:
new_sampleSet_groupType_id = None
#if new_sampleSetName is missing, the rest of the input will be ignored
if new_sampleSetName:
isValid, errorMessage = sample_validator.validate_sampleSet_values(new_sampleSetName, new_sampleSetDesc, True)
if errorMessage:
return isValid, errorMessage,sampleSet_ids
currentDateTime = timezone.now() ##datetime.datetime.now()
sampleSet_kwargs = {
'description' : new_sampleSetDesc,
'status' : "created",
'creationDate' : currentDateTime,
'lastModifiedUser' : user,
'lastModifiedDate' : currentDateTime
}
sampleSet, isCreated = SampleSet.objects.get_or_create(
displayedName = new_sampleSetName.strip(),
SampleGroupType_CV_id = new_sampleSet_groupType_id,
creator = user,
defaults = sampleSet_kwargs)
#logger.debug("views_helper._get_or_create_sampleSets sampleSetName=%s isCreated=%s" %(new_sampleSetName, str(isCreated)))
sampleSet_ids.append(sampleSet.id)
logger.debug("views_helper._get_or_create_sampleSets EXIT sampleSet_ids=%s" %(sampleSet_ids))
return True, None, sampleSet_ids
def _get_or_create_sampleSets(request, user):
queryDict = request.POST
logger.info("views._get_or_create_sampleSets POST queryDict=%s" %(queryDict))
sampleSet_ids = []
new_sampleSetName = queryDict.get("new_sampleSetName", "").strip()
new_sampleSetDesc = queryDict.get("new_sampleSetDescription", "").strip()
new_sampleSet_groupType_id = queryDict.get("new_sampleSet_groupType", None)
selected_sampleSet_ids = queryDict.getlist("sampleset", [])
#logger.debug("views_helper._get_or_create_sampleSets selected_sampleSet_ids=%s" %(selected_sampleSet_ids))
if selected_sampleSet_ids:
selected_sampleSet_ids = [ssi.encode('utf8') for ssi in selected_sampleSet_ids]
if (selected_sampleSet_ids):
sampleSet_ids.extend(selected_sampleSet_ids)
#logger.debug("views_helper._get_or_create_sampleSets sampleSet_ids=%s" %(sampleSet_ids))
#nullify group type if user does not specify a group type
if new_sampleSet_groupType_id == '0' or new_sampleSet_groupType_id == 0:
new_sampleSet_groupType_id = None
#if new_sampleSetName is missing, the rest of the input will be ignored
if new_sampleSetName:
isValid, errorMessage = sample_validator.validate_sampleSet_values(new_sampleSetName, new_sampleSetDesc, True)
if errorMessage:
return isValid, errorMessage,sampleSet_ids
currentDateTime = timezone.now() ##datetime.datetime.now()
sampleSet_kwargs = {
'description' : new_sampleSetDesc,
'status' : "created",
'creationDate' : currentDateTime,
'lastModifiedUser' : user,
'lastModifiedDate' : currentDateTime
}
sampleSet, isCreated = SampleSet.objects.get_or_create(
displayedName = new_sampleSetName.strip(),
SampleGroupType_CV_id = new_sampleSet_groupType_id,
creator = user,
defaults = sampleSet_kwargs)
#logger.debug("views_helper._get_or_create_sampleSets sampleSetName=%s isCreated=%s" %(new_sampleSetName, str(isCreated)))
sampleSet_ids.append(sampleSet.id)
logger.debug("views_helper._get_or_create_sampleSets EXIT sampleSet_ids=%s" %(sampleSet_ids))
return True, None, sampleSet_ids
def _get_or_create_sampleSets(request, user):
queryDict = request.POST
logger.info("views._get_or_create_sampleSets POST queryDict=%s" % (queryDict))
sampleSet_ids = []
new_sampleSetName = queryDict.get("new_sampleSetName", "").strip()
new_sampleSetDesc = queryDict.get("new_sampleSetDescription", "").strip()
new_sampleSet_groupType_id = queryDict.get("new_sampleSet_groupType", None)
new_sampleSet_libraryPrepType = queryDict.get("new_sampleSet_libraryPrepType", "").strip()
new_sampleSet_libraryPrepKitName = queryDict.get("new_sampleSet_libraryPrepKit", "").strip()
new_sampleSet_pcrPlateSerialNum = queryDict.get("new_sampleSet_pcrPlateSerialNum", "").strip()
selected_sampleSet_ids = queryDict.getlist("sampleset", [])
# logger.debug("views_helper._get_or_create_sampleSets selected_sampleSet_ids=%s" %(selected_sampleSet_ids))
if selected_sampleSet_ids:
selected_sampleSet_ids = [ssi.encode('utf8') for ssi in selected_sampleSet_ids]
if (selected_sampleSet_ids):
sampleSet_ids.extend(selected_sampleSet_ids)
# logger.debug("views_helper._get_or_create_sampleSets sampleSet_ids=%s" %(sampleSet_ids))
# nullify group type if user does not specify a group type
if new_sampleSet_groupType_id == '0' or new_sampleSet_groupType_id == 0:
new_sampleSet_groupType_id = None
# if new_sampleSetName is missing, the rest of the input will be ignored
if new_sampleSetName:
isValid, errorMessage = sample_validator.validate_sampleSet_values(new_sampleSetName, new_sampleSetDesc, new_sampleSet_pcrPlateSerialNum, True)
if errorMessage:
return isValid, errorMessage, sampleSet_ids
currentDateTime = timezone.now() ##datetime.datetime.now()
sampleSetStatus = "created"
if new_sampleSet_libraryPrepType and "chef" in new_sampleSet_libraryPrepType.lower():
libraryPrepInstrument = "chef"
sampleSetStatus = "libPrep_pending"
else:
libraryPrepInstrument = ""
sampleSet_kwargs = {
'description': new_sampleSetDesc,
'pcrPlateSerialNum': new_sampleSet_pcrPlateSerialNum,
'libraryPrepKitName': new_sampleSet_libraryPrepKitName,
'status': sampleSetStatus,
'creationDate': currentDateTime,
'lastModifiedUser': user,
'lastModifiedDate': currentDateTime
}
sampleSet, isCreated = SampleSet.objects.get_or_create(
displayedName=new_sampleSetName.strip(),
SampleGroupType_CV_id=new_sampleSet_groupType_id,
libraryPrepType=new_sampleSet_libraryPrepType,
libraryPrepInstrument=libraryPrepInstrument,
creator=user,
defaults=sampleSet_kwargs)
if isCreated:
if sampleSet.libraryPrepInstrument == "chef":
libraryPrepInstrumentData_obj = models.SamplePrepData.objects.create(samplePrepDataType="lib_prep")
sampleSet.libraryPrepInstrumentData = libraryPrepInstrumentData_obj
logger.debug("views_helper - sampleSet.id=%d; isCreated=%s; GOING TO ADD libraryPrepInstrumentData_obj.id=%d" % (sampleSet.id, str(isCreated), libraryPrepInstrumentData_obj.id))
sampleSet.save()
else:
if sampleSet.libraryPrepInstrument == "":
if sampleSet.libraryPrepInstrumentData:
logger.debug("views_helper - sampleSet.id=%d; isCreated=%s; GOIGN TO DELETE libraryPrepInstrumentData_obj.id=%d" % (sampleSet.id, str(isCreated), sampleSet.libraryPrepInstrumentData.id))
sampleSet.libraryPrepInstrumentData.delete()
# sampleSet.save()
# logger.debug("views_helper._get_or_create_sampleSets sampleSetName=%s isCreated=%s" %(new_sampleSetName, str(isCreated)))
sampleSet_ids.append(sampleSet.id)
logger.debug("views_helper._get_or_create_sampleSets EXIT sampleSet_ids=%s" % (sampleSet_ids))
return True, None, sampleSet_ids
def _get_or_create_sampleSets(request, user):
queryDict = request.POST
logger.info("views._get_or_create_sampleSets POST queryDict=%s" %
(queryDict))
sampleSet_ids = []
new_sampleSetName = queryDict.get("new_sampleSetName", "").strip()
new_sampleSetDesc = queryDict.get("new_sampleSetDescription", "").strip()
new_sampleSet_groupType_id = queryDict.get("new_sampleSet_groupType", None)
new_sampleSet_libraryPrepType = queryDict.get(
"new_sampleSet_libraryPrepType", "").strip()
new_sampleSet_libraryPrepKitName = queryDict.get(
"new_sampleSet_libraryPrepKit", "").strip()
new_sampleSet_pcrPlateSerialNum = queryDict.get(
"new_sampleSet_pcrPlateSerialNum", "").strip()
selected_sampleSet_ids = queryDict.getlist("sampleset", [])
# logger.debug("views_helper._get_or_create_sampleSets selected_sampleSet_ids=%s" %(selected_sampleSet_ids))
if selected_sampleSet_ids:
selected_sampleSet_ids = [
ssi.encode('utf8') for ssi in selected_sampleSet_ids
]
if (selected_sampleSet_ids):
sampleSet_ids.extend(selected_sampleSet_ids)
# logger.debug("views_helper._get_or_create_sampleSets sampleSet_ids=%s" %(sampleSet_ids))
# nullify group type if user does not specify a group type
if new_sampleSet_groupType_id == '0' or new_sampleSet_groupType_id == 0:
new_sampleSet_groupType_id = None
# if new_sampleSetName is missing, the rest of the input will be ignored
if new_sampleSetName:
isValid, errorMessage = sample_validator.validate_sampleSet_values(
new_sampleSetName, new_sampleSetDesc,
new_sampleSet_pcrPlateSerialNum, True)
if errorMessage:
return isValid, errorMessage, sampleSet_ids
currentDateTime = timezone.now() ##datetime.datetime.now()
sampleSetStatus = "created"
if new_sampleSet_libraryPrepType and "chef" in new_sampleSet_libraryPrepType.lower(
):
libraryPrepInstrument = "chef"
sampleSetStatus = "libPrep_pending"
else:
libraryPrepInstrument = ""
sampleSet_kwargs = {
'description': new_sampleSetDesc,
'pcrPlateSerialNum': new_sampleSet_pcrPlateSerialNum,
'libraryPrepKitName': new_sampleSet_libraryPrepKitName,
'status': sampleSetStatus,
'creationDate': currentDateTime,
'lastModifiedUser': user,
'lastModifiedDate': currentDateTime
}
sampleSet, isCreated = SampleSet.objects.get_or_create(
displayedName=new_sampleSetName.strip(),
SampleGroupType_CV_id=new_sampleSet_groupType_id,
libraryPrepType=new_sampleSet_libraryPrepType,
libraryPrepInstrument=libraryPrepInstrument,
creator=user,
defaults=sampleSet_kwargs)
if isCreated:
if sampleSet.libraryPrepInstrument == "chef":
libraryPrepInstrumentData_obj = models.SamplePrepData.objects.create(
samplePrepDataType="lib_prep")
sampleSet.libraryPrepInstrumentData = libraryPrepInstrumentData_obj
logger.debug(
"views_helper - sampleSet.id=%d; isCreated=%s; GOING TO ADD libraryPrepInstrumentData_obj.id=%d"
% (sampleSet.id, str(isCreated),
libraryPrepInstrumentData_obj.id))
sampleSet.save()
else:
if sampleSet.libraryPrepInstrument == "":
if sampleSet.libraryPrepInstrumentData:
logger.debug(
"views_helper - sampleSet.id=%d; isCreated=%s; GOIGN TO DELETE libraryPrepInstrumentData_obj.id=%d"
% (sampleSet.id, str(isCreated),
sampleSet.libraryPrepInstrumentData.id))
sampleSet.libraryPrepInstrumentData.delete()
# sampleSet.save()
# logger.debug("views_helper._get_or_create_sampleSets sampleSetName=%s isCreated=%s" %(new_sampleSetName, str(isCreated)))
sampleSet_ids.append(sampleSet.id)
logger.debug(
"views_helper._get_or_create_sampleSets EXIT sampleSet_ids=%s" %
(sampleSet_ids))
return True, None, sampleSet_ids
