Beispiel #1
0
    def test_fetcher(self):
        class TestFetcher(schema_salad.ref_resolver.Fetcher):
            def __init__(self, a, b):
                pass

            def fetch_text(self, url):  # type: (unicode) -> unicode
                if url == "baz:bar/foo.cwl":
                    return """
cwlVersion: v1.0
class: CommandLineTool
baseCommand: echo
inputs: []
outputs: []
"""
                else:
                    raise RuntimeError("Not foo.cwl")

            def check_exists(self, url):  # type: (unicode) -> bool
                if url == "baz:bar/foo.cwl":
                    return True
                else:
                    return False

        def test_resolver(d, a):
            return "baz:bar/" + a

        load_tool("foo.cwl", defaultMakeTool, resolver=test_resolver, fetcher_constructor=TestFetcher)

        self.assertEquals(0, main(["--print-pre", "--debug", "foo.cwl"], resolver=test_resolver,
                                  fetcher_constructor=TestFetcher))
    def test_fetcher(self):
        class TestFetcher(schema_salad.ref_resolver.Fetcher):
            def __init__(self, a, b):
                pass

            def fetch_text(self, url):    # type: (unicode) -> unicode
                if url == "baz:bar/foo.cwl":
                    return """
cwlVersion: v1.0
class: CommandLineTool
baseCommand: echo
inputs: []
outputs: []
"""
                else:
                    raise RuntimeError("Not foo.cwl")

            def check_exists(self, url):  # type: (unicode) -> bool
                if url == "baz:bar/foo.cwl":
                    return True
                else:
                    return False

        def test_resolver(d, a):
            return "baz:bar/" + a

        load_tool("foo.cwl", defaultMakeTool, resolver=test_resolver, fetcher_constructor=TestFetcher)

        self.assertEquals(0, main(["--print-pre", "--debug", "foo.cwl"], resolver=test_resolver, fetcher_constructor=TestFetcher))
Beispiel #3
0
    def test_fetcher(self):
        class TestFetcher(schema_salad.ref_resolver.Fetcher):
            def __init__(self, a, b):
                pass

            def fetch_text(self, url):  # type: (unicode) -> unicode
                if url == "baz:bar/foo.cwl":
                    return """
cwlVersion: v1.0
class: CommandLineTool
baseCommand: echo
inputs: []
outputs: []
"""
                else:
                    raise RuntimeError("Not foo.cwl, was %s" % url)

            def check_exists(self, url):  # type: (unicode) -> bool
                if url == "baz:bar/foo.cwl":
                    return True
                else:
                    return False

            def urljoin(self, base, url):
                urlsp = urllib.parse.urlsplit(url)
                if urlsp.scheme:
                    return url
                basesp = urllib.parse.urlsplit(base)

                if basesp.scheme == "keep":
                    return base + "/" + url
                return urllib.parse.urljoin(base, url)

        def test_resolver(d, a):
            if a.startswith("baz:bar/"):
                return a
            else:
                return "baz:bar/" + a

        loadingContext = LoadingContext({
            "construct_tool_object": default_make_tool,
            "resolver": test_resolver,
            "fetcher_constructor": TestFetcher
        })

        load_tool("foo.cwl", loadingContext)

        self.assertEquals(
            0,
            main(["--print-pre", "--debug", "foo.cwl"],
                 loadingContext=loadingContext))
Beispiel #4
0
    def test_fetcher(self):
        class TestFetcher(schema_salad.ref_resolver.Fetcher):
            def __init__(self, a, b):
                pass

            def fetch_text(self, url):  # type: (unicode) -> unicode
                if url == "baz:bar/foo.cwl":
                    return """
cwlVersion: v1.0
class: CommandLineTool
baseCommand: echo
inputs: []
outputs: []
"""
                else:
                    raise RuntimeError("Not foo.cwl, was %s" % url)

            def check_exists(self, url):  # type: (unicode) -> bool
                if url == "baz:bar/foo.cwl":
                    return True
                else:
                    return False

            def urljoin(self, base, url):
                    urlsp = urllib.parse.urlsplit(url)
                    if urlsp.scheme:
                        return url
                    basesp = urllib.parse.urlsplit(base)

                    if basesp.scheme == "keep":
                        return base + "/" + url
                    return urllib.parse.urljoin(base, url)

        def test_resolver(d, a):
            if a.startswith("baz:bar/"):
                return a
            else:
                return "baz:bar/" + a

        loadingContext = LoadingContext({"construct_tool_object": default_make_tool,
                                         "resolver": test_resolver,
                                         "fetcher_constructor": TestFetcher})

        load_tool("foo.cwl", loadingContext)

        self.assertEquals(0, main(["--print-pre", "--debug", "foo.cwl"], loadingContext=loadingContext))