def literature_search(query_terms, type='full_name'):
"""
perform a google scholar query with given terms
"""
querier = ScholarQuerier()
settings = ScholarSettings()
config = ScholarConf()
settings.set_citation_format(ScholarSettings.CITFORM_BIBTEX)
querier.apply_settings(settings)
query = SearchScholarQuery()
papers = []
for item in query_terms.values:
repo_id = item[0]
if type !='full_name':
repo_name = item[1]
phrase = item[2]
keywords = item[3]
start_year = item[4]
if keywords:
if ',' not in keywords:
keywords = keywords + ','
query.set_words_some(keywords)
query.set_words(repo_name)
query.set_phrase(phrase)
phrase_text = repo_name + ', ' + phrase
else:
phrase = item[1]
start_year = item[2]
query.set_phrase(phrase) # commontk/CTK, meoyo/AIPS
phrase_text = phrase
print('search papers for {} ...'.format(phrase_text))
query.set_timeframe(start_year)
querier.send_query(query)
articles = querier.articles
if len(articles)==0:
continue
results = process_arts(config, item[0], phrase_text, articles)
papers = papers + results
time_delay = random.randrange(1,10)
time.sleep(time_delay)
return papers
DST = Path(__file__).absolute().parents[1] / 'publications.bib'
IGNORE = """
vo2014cytotoxicity
takeilnatriureticpeptideisolatedfromeelbrain
matchintemporal
brodbeck2018transformation
""".split()
ACRONYMS = ['EEG', 'MEG', 'MRI']
querier = ScholarQuerier()
settings = ScholarSettings()
settings.set_citation_format(ScholarSettings.CITFORM_BIBTEX)
querier.apply_settings(settings)
query = SearchScholarQuery()
query.set_phrase("eelbrain")
query.set_timeframe(2012, None)
query.set_include_patents(False)
bib = parse_file(DST, 'bibtex')
start = 0
while True:
querier.send_query(query)
if len(querier.articles) == 0:
break
# extract articles
for article in querier.articles:
querier.get_citation_data(article)
# convert to pybtex entry
data = parse_bytes(article.citation_data, 'bibtex')
assert len(data.entries) == 1
DST = Path(__file__).absolute().parents[1] / 'publications.bib'
IGNORE = """
vo2014cytotoxicity
takeilnatriureticpeptideisolatedfromeelbrain
matchintemporal
brodbeck2018transformation
""".split()
ACRONYMS = ['EEG', 'MEG', 'MRI']
querier = ScholarQuerier()
settings = ScholarSettings()
settings.set_citation_format(ScholarSettings.CITFORM_BIBTEX)
querier.apply_settings(settings)
query = SearchScholarQuery()
query.set_phrase("eelbrain")
query.set_timeframe(2012, None)
query.set_include_patents(False)
bib = parse_file(DST, 'bibtex')
start = 0
while True:
querier.send_query(query)
if len(querier.articles) == 0:
break
# extract articles
for article in querier.articles:
querier.get_citation_data(article)
# convert to pybtex entry
data = parse_bytes(article.citation_data, 'bibtex')
assert len(data.entries) == 1
for entry in data.entries.values():
