def test_application_qc(self):
"""Test application specific qc"""
data = application_qc(
application="reseq",
project_name=self.examples["project"],
flowcell=self.examples["flowcell"].split("_")[-1],
username=self.user,
password=self.pw,
projectdb="projects-test",
sampledb="samples-test",
url=self.url)
tab = [
x for x in data['stdout'].getvalue().split("\n")
if x.startswith("P001")
]
self.assertEqual(len(tab), 2)
def application_qc(self):
if not self._check_pargs(["project_name"]):
return
out_data = application_qc(**vars(self.pargs))
self.app._output_data['stdout'].write(out_data['stdout'].getvalue())
self.app._output_data['stderr'].write(out_data['stderr'].getvalue())
def application_qc(self):
if not self._check_pargs(["project_name"]):
return
out_data = application_qc(**vars(self.pargs))
self.app._output_data['stdout'].write(out_data['stdout'].getvalue())
self.app._output_data['stderr'].write(out_data['stderr'].getvalue())
def test_application_qc(self):
"""Test application specific qc"""
data = application_qc(application="reseq", project_name=self.examples["project"], flowcell=self.examples["flowcell"].split("_")[-1], username=self.user, password=self.pw, projectdb="projects-test", sampledb="samples-test", url=self.url)
tab = [x for x in data['stdout'].getvalue().split("\n") if x.startswith("P001")]
self.assertEqual(len(tab), 2)