def create_event(institute_id, case_id):
institute = validate_user(current_user, institute_id)
case_model = store.case(institute_id, case_id)
link = request.form.get('link')
content = request.form.get('content')
variant_id = request.args.get('variant_id')
if variant_id:
# create a variant comment
variant_model = store.variant(variant_id)
level = request.form.get('level', 'specific')
store.comment(institute,
case_model,
current_user,
link,
variant=variant_model,
content=content,
comment_level=level)
else:
# create a case comment
store.comment(institute,
case_model,
current_user,
link,
content=content)
return redirect(request.referrer)
def cases(institute_id):
"""Fetch all cases belonging to a specific institute.
Args:
institute_id (str): unique institute display name
Returns:
Response: jsonified MongoDB objects as a list
"""
institute = validate_user(current_user, institute_id)
case_models = store.cases(collaborator=institute_id)
non_archived = (case for case in case_models if case.status != 'archived')
def case_synopsis(institute_id, case_id):
"""Update (PUT) synopsis of a specific case."""
institute = validate_user(current_user, institute_id)
case_model = store.case(institute_id, case_id)
new_synopsis = request.json.get('synopsis', case_model.synopsis)
if case_model.synopsis != new_synopsis:
# create event only if synopsis was actually changed
link = url_for('core.case', institute_id=institute_id, case_id=case_id)
store.update_synopsis(institute, case_model, current_user, link,
content=new_synopsis)
return jsonify(synopsis=case_model.synopsis, ok=True)
def case_status(institute_id, case_id):
"""Update status of a specific case."""
institute = validate_user(current_user, institute_id)
case_model = store.case(institute_id, case_id)
status = request.form.get('status', case_model.status)
link = url_for('core.case', institute_id=institute_id, case_id=case_id)
if status == 'archive':
store.archive_case(institute, case_model, current_user, status, link)
else:
store.update_status(institute, case_model, current_user, status, link)
return redirect(request.referrer)
def cases(institute_id):
"""Fetch all cases belonging to a specific institute.
Args:
institute_id (str): unique institute display name
Returns:
Response: jsonified MongoDB objects as a list
"""
institute = validate_user(current_user, institute_id)
case_models = store.cases(collaborator=institute_id)
non_archived = (case for case in case_models if case.status != 'archived')
raw_models = [model.to_mongo() for model in case_models]
return Response(dumps(raw_models), mimetype='application/json; charset=utf-8')
def manual_rank(institute_id, case_id, variant_id):
"""Update the manual variant rank for a variant."""
institute = validate_user(current_user, institute_id)
case_model = store.case(institute_id, case_id)
variant_model = store.variant(document_id=variant_id)
# update the manual rank
new_manual_rank = int(request.json.get('manual_rank'))
link = request.referrer
store.update_manual_rank(institute, case_model, current_user, link,
variant_model, new_manual_rank)
return jsonify(manual_rank=variant_model.manual_rank, ok=True)
def case_status(institute_id, case_id):
"""Update status of a specific case."""
institute = validate_user(current_user, institute_id)
case_model = store.case(institute_id, case_id)
status = request.form.get('status', case_model.status)
link = url_for('core.case', institute_id=institute_id, case_id=case_id)
if status == 'archive':
store.archive_case(institute, case_model, current_user, status, link)
else:
store.update_status(institute, case_model, current_user, status, link)
return redirect(request.referrer)
def manual_rank(institute_id, case_id, variant_id):
"""Update the manual variant rank for a variant."""
institute = validate_user(current_user, institute_id)
case_model = store.case(institute_id, case_id)
variant_model = store.variant(document_id=variant_id)
# update the manual rank
new_manual_rank = int(request.json.get('manual_rank'))
link = request.referrer
store.update_manual_rank(institute, case_model, current_user, link,
variant_model, new_manual_rank)
return jsonify(manual_rank=variant_model.manual_rank, ok=True)
def case_synopsis(institute_id, case_id):
"""Update (PUT) synopsis of a specific case."""
institute = validate_user(current_user, institute_id)
case_model = store.case(institute_id, case_id)
new_synopsis = request.json.get('synopsis', case_model.synopsis)
if case_model.synopsis != new_synopsis:
# create event only if synopsis was actually changed
link = url_for('core.case', institute_id=institute_id, case_id=case_id)
store.update_synopsis(institute,
case_model,
current_user,
link,
content=new_synopsis)
return jsonify(synopsis=case_model.synopsis, ok=True)
def create_event(institute_id, case_id):
institute = validate_user(current_user, institute_id)
case_model = store.case(institute_id, case_id)
link = request.form.get('link')
content = request.form.get('content')
variant_id = request.args.get('variant_id')
if variant_id:
# create a variant comment
variant_model = store.variant(variant_id)
level = request.form.get('level', 'specific')
store.comment(institute, case_model, current_user, link, variant=variant_model,
content=content, comment_level=level)
else:
# create a case comment
store.comment(institute, case_model, current_user, link, content=content)
return redirect(request.referrer)
def delete_event(institute_id, case_id, event_id=None): validate_user(current_user, institute_id) store.delete_event(event_id) return redirect(request.referrer)
def delete_event(institute_id, case_id, event_id=None):
validate_user(current_user, institute_id)
store.delete_event(event_id)
return redirect(request.referrer)