def advanced_phenotypes(institute_id):
"""Show institute-level advanced phenotypes"""
institute_obj = institute_and_case(store, institute_id)
# Get a list of all users which are registered to this institute or collaborate with it
collaborators = set()
for inst_id in [institute_id] + institute_obj.get("collaborators", []):
for user in store.users(institute=inst_id):
if (user["email"] == current_user.email
): # Do not include current user among collaborators
continue
collaborators.add((user["email"], user["name"], inst_id))
if request.form.get("create_model"): # creating a new phenomodel
store.create_phenomodel(institute_id, request.form.get("model_name"),
request.form.get("model_desc"))
pheno_form = PhenoModelForm(request.form or None)
phenomodels = list(store.phenomodels(institute_id=institute_id))
data = {
"institute": institute_obj,
"collaborators": collaborators,
"pheno_form": pheno_form,
"phenomodels": phenomodels,
}
return data
def institute(store, institute_id):
"""Process institute data.
Args:
store(adapter.MongoAdapter)
institute_id(str)
Returns
data(dict): includes institute obj and specific settings
"""
institute_obj = store.institute(institute_id)
users = list(store.users(institute_id))
data = {"institute": institute_obj, "users": users}
return data