def view(request):
session = DBSession()
ro, view_params = view_init_min(request, session)
view_params['scene'] = Markup(ro.value)
return view_params
def view(request):
session = DBSession()
ro, view_params = view_init_min(request, session)
view_params['description'] = Markup(ro.html_description())
prov_def = ro.repr_json(full=True)
data = {}
workflow = ROWorkflow.get(session, prov_def['workflow'])
if workflow is not None:
store = {}
workflow_def = workflow.repr_json(full=True)
for node_def in workflow_def['nodes']:
nid = node_def['id']
wnode = ROWorkflowNode.get(session, nid)
if wnode is None:
pass
else:
store[nid] = wnode.repr_json(full=True)
store[nid]['url'] = request.route_url('ro_view_home', uid=nid)
txt, viewbox = svg.export_workflow(workflow_def, store, (800, 600))
view_params['svg_repr'] = txt
view_params['svg_viewbox'] = json.dumps(viewbox)
prov = prov_def
fmt_data = {}
for data_obj in prov['data']:
dtype = data_obj['type']
if dtype == "ref": # internally used to reference another RO
url = request.route_url('ro_view_home', uid=data_obj["value"])
val = '<p><a href="%s">link to RO</a></p>' % url
elif dtype == "int":
val = "<p>%d</p>" % data_obj["value"]
elif dtype == "str":
val = "<p>%s</p>" % data_obj["value"]
elif dtype == "url":
val = "<p>%s</p>" % data_obj["value"]
elif dtype in ("image", "IImage"):
img_data = data_obj["value"].replace("\n", "")
val = '<img src="data:image/png;base64,%s" />' % img_data
else:
val = "<p>%s</p>" % json.dumps(data_obj["value"])
fmt_data[data_obj['id']] = (dtype, val)
for pexec in prov['executions']:
nid = pexec['node']
for port in pexec['inputs']:
if port['data'] is not None:
key = "wkf_node_%d_input_%s" % (nid, port['port'])
data[key] = fmt_data[port['data']]
for port in pexec['outputs']:
if port['data'] is not None:
key = "wkf_node_%d_output_%s" % (nid, port['port'])
data[key] = fmt_data[port['data']]
view_params['wkf_data'] = data
return view_params
def view(request):
session = DBSession()
ro, view_params = view_init_min(request, session)
view_params['description'] = Markup(ro.html_description())
view_params['value'] = json.loads(ro.value)
return view_params
def view(request):
session = DBSession()
ro, view_params = view_init_min(request, session)
view_params['description'] = Markup(ro.html_description())
citations = [link.source for link in ro.in_links if link.type == "use"]
view_params['citations'] = citations
return view_params
def view(request):
session = DBSession()
ro, view_params = view_init_min(request, session)
view_params['description'] = Markup(ro.html_description())
ancestors = []
for link in ro.in_links:
if link.type == 'is_ancestor_of':
ancestors.append(ResearchObject.get(session, link.source))
view_params['ancestors'] = ancestors
return view_params
def view(request):
session = DBSession()
ro, view_params = view_init_min(request, session)
view_params['description'] = Markup(ro.html_description())
value = ""
for i in range(10):
value += ro.value[(i * 50):((i + 1) * 50)]
value += "\n"
if len(ro.value) > 500:
value += "\n ..."
view_params['value'] = value
return view_params
def view(request):
session = DBSession()
ro, view_params = view_init_min(request, session)
if view_params["allow_edit"] and ('new_content' in request.params or request.params.get("ro_id", "") != ""):
if append_ro(request, session, ro) is not None:
loc = request.current_route_url()
return HTTPFound(location=loc)
view_params['description'] = Markup(ro.html_description())
content = []
for link in ro.out_links:
if link.type == "contains":
ro = ResearchObject.get(session, link.target)
content.append((ro.name.lower(), ro))
content.sort()
view_params['content'] = [ro for name, ro in content]
return view_params
def view(request):
session = DBSession()
ro, view_params = view_init_min(request, session)
view_params['description'] = Markup(ro.html_description())
store = {}
node_def = ro.repr_json(full=True)
for port in chain(node_def['inputs'], node_def['outputs']):
iid = port['interface']
iface = ROInterface.get(session, iid)
if iface is None:
pass
else:
store[iid] = iface.repr_json(full=True)
store[iid]['url'] = request.route_url('ro_view_home', uid=iid)
txt, viewbox = svg.export_node(node_def, store, (800, 300))
view_params['svg_repr'] = txt
view_params['svg_viewbox'] = json.dumps(viewbox)
return view_params
def view(request):
session = DBSession()
ro, view_params = view_init_min(request, session)
view_params['description'] = Markup(ro.html_description())
store = {}
workflow_def = ro.repr_json(full=True)
for node_def in workflow_def['nodes']:
nid = node_def['id']
wnode = ROWorkflowNode.get(session, nid)
if wnode is None:
pass
# elif wnode.category == "alias":
# wnode = resolve_target(session, wnode)
# store[nid] = wnode.load_definition()
# store[nid]['url'] = request.route_url('project_content_alias_view_item', pid=wnode.project, cid=nid)
else:
store[nid] = wnode.repr_json(full=True)
store[nid]['url'] = request.route_url('ro_view_home', uid=nid)
for nid, node in store.items():
for port in node['inputs'] + node['outputs']:
iid = port['interface']
iface = ROInterface.get(session, iid)
if iface is None:
pass
else:
store[iid] = iface.repr_json(full=True)
store[iid]['url'] = request.route_url('ro_view_home', uid=iid)
txt, viewbox = svg.export_workflow(workflow_def, store, (800, 600))
view_params['svg_repr'] = txt
view_params['svg_viewbox'] = json.dumps(viewbox)
return view_params