def info(cs, sequence):
print_colored("INFO", "green")
seq = Seq(sequence)
response = seq.percentage_base(
) # -- We have created a new function in Seq1.py to print A: number (percentage)%
final_response = "Sequence: " + sequence + "\n" + "Total Length: " + str(
seq.len()) + "\n" + response
print(final_response)
cs.send(str(final_response).encode())
"RBMY2YP": "ENSG00000227633",
"FGFR3": "ENSG00000068078",
"KDR": "ENSG00000128052",
"ANK2": "ENSG00000145362"
}
SERVER = "rest.ensembl.org"
ENDPOINT = "/sequence/id/"
PARAMETERS = "?content-type=application/json"
connection = http.client.HTTPConnection(SERVER)
try:
user_gene = input("Enter the gene that you want to analyze:")
id = DICT_GENE[user_gene]
connection.request("GET", ENDPOINT + id + PARAMETERS)
response = connection.getresponse()
if response.status == 200:
response_dict = json.loads(response.read().decode())
sequence = Seq(response_dict["seq"])
s_length = sequence.len()
percentages = sequence.percentage_base(sequence.count_base())
most_frequent_base = sequence.frequent_base(sequence.count())
print("Total length:", s_length)
for value in percentages.values():
print(value)
print("Most frequent base:", most_frequent_base)
except KeyError:
print("The key is not inside our dictionary. Choose one of the following:",
list(DICT_GENE.keys))
def info(sequence):
seq = Seq(sequence)
response = seq.percentage_base() # -- We have created a new function in Seq1.py to print A: number (percentage)%
final_response = "Sequence: " + sequence + "\n" + "Total Length: " + str(seq.len()) + "\n" + response
return final_response