def motif_results():
input_seq = seqtools.clean(request.form['input_seq'])
motif_seq = seqtools.clean(request.form['motif_seq'])
input_text = seqtools.chunks(input_seq, 120)
motif_text = seqtools.chunks(motif_seq, 120)
if motif_seq in input_seq:
out_text = 'The sequence DOES contain the motif'
else:
out_text = 'The sequence does NOT contain the motif'
return render_template('motif_results.html', **locals())
def seq_comp_results():
input_seq1 = Seq(seqtools.clean(request.form['input_seq1']))
input_seq2 = Seq(seqtools.clean(request.form['input_seq2']))
input_text1 = str(input_seq1)
input_text2 = str(input_seq2)
alignments = pairwise2.align.globalxx(input_seq1, input_seq2)
output_text = str(pairwise2.format_alignment(*alignments[0]).join(' '))
#output_text=alignments[0]
return render_template('seq_comparison_results.html', **locals())
def transform_results():
input_seq = seqtools.clean(request.form['input_seq'])
transform = request.form['transform']
input_seq = Seq(input_seq)
if transform == 'translate':
output_seq = seqtools.cutseq(input_seq).translate()
elif transform == 'transcribe':
output_seq = input_seq.transcribe()
output_text = seqtools.chunks(output_seq, 120)
input_text = seqtools.chunks(input_seq, 120)
return render_template('transform_results.html', **locals())
def GCcont_results():
input_seq = Seq(seqtools.clean(request.form['input_seq']))
input_text = str(input_seq)
output_text = str(GC(input_seq))
return render_template('GCcont_results.html', **locals())
def revcomp_results():
input_seq = Seq(seqtools.clean(request.form['input_seq']))
input_text = str(input_seq)
output_text = str(input_seq.complement())
return render_template('complementary_reverse_results.html', **locals())