def test_sample_splits_genome_coverage_three(testdir, mock_testclass):
sample = 'POLR2A'
genome = 'human.sizes'
split1 = sample + '-100-110'
split2 = sample + '-110-120'
sb.splits = MagicMock(return_value=[split1, split2])
gc.genome_coverage = MagicMock()
gc.sample_splits_genome_coverage(sample, genome, genomecov_args=('-3'))
sb.splits.assert_called_once_with(sample)
gc.genome_coverage.assert_any_call(sample, genome, None, None, '', '-cov', None, None, ('-3'))
gc.genome_coverage.assert_any_call(split1, genome, None, None, '', '-cov', None, None, ('-3'))
gc.genome_coverage.assert_any_call(split2, genome, None, None, '', '-cov', None, None, ('-3'))
def test_sample_splits_genome_coverage_positivestrand(testdir, mock_testclass):
sample = 'POLR2A'
genome = 'human.sizes'
split1 = sample + '-100-110'
split2 = sample + '-110-120'
strand = '+'
sb.splits = MagicMock(return_value=[split1, split2])
gc.genome_coverage = MagicMock()
gc.sample_splits_genome_coverage(sample, genome, strand=strand)
sb.splits.assert_called_once_with(sample)
gc.genome_coverage.assert_any_call(sample, genome, None, strand, '', '-cov', None, None, ())
gc.genome_coverage.assert_any_call(split1, genome, None, strand, '', '-cov', None, None, ())
gc.genome_coverage.assert_any_call(split2, genome, None, strand, '', '-cov', None, None, ())
def test_sample_splits_genome_coverage_parameters(testdir, mock_testclass):
sample = 'POLR2A'
genome = 'human.sizes'
split1 = sample + '-100-110'
split2 = sample + '-110-120'
scale = 1.5
strand = '+'
input_suffix = '-forcov'
output_suffix = '-outcov'
spike_suffix = '-pombe'
control_suffix = '-input'
sb.splits = MagicMock(return_value=[split1, split2])
gc.genome_coverage = MagicMock()
gc.sample_splits_genome_coverage(sample, genome, scale, strand, input_suffix, output_suffix, spike_suffix, control_suffix, ('-5',))
sb.splits.assert_called_once_with(sample)
gc.genome_coverage.assert_any_call(sample, genome, scale, strand, input_suffix, output_suffix, spike_suffix, control_suffix, ('-5',))
gc.genome_coverage.assert_any_call(split1, genome, scale, strand, input_suffix, output_suffix, spike_suffix, control_suffix, ('-5',))
gc.genome_coverage.assert_any_call(split2, genome, scale, strand, input_suffix, output_suffix, spike_suffix, control_suffix, ('-5',))