def test_operators(self):
s1 = sequtils.Sequence('ACGT')
# add
res = s1 + 'AAAA'
self.assertEqual(res.sequence, 'ACGTAAAA')
res = s1 + sequtils.Sequence('AAAA')
self.assertEqual(res, 'ACGTAAAA')
# contains
self.assertTrue('CG' in res)
self.assertTrue('AAA' in res)
self.assertFalse('AGAGAGAG' in res)
# len
self.assertEqual(len(res), 8)
return
def test_entropy(self, sequence, res):
obj = sequtils.Sequence(sequence)
self.assertEqual(round(obj.entropy, 2), res)
return
def test_properties(self):
s = sequtils.Sequence('ACGT')
self.assertEqual(s.sequence, 'ACGT')
return
def test_polylength(self, sequence, res):
obj = sequtils.Sequence(sequence)
self.assertEqual(obj.polylength, res)
return
def test_polydict(self, sequence, res):
obj = sequtils.Sequence(sequence)
self.assertEqual(obj.polydict, res)
return
def test_aa(self, sequence, res):
obj = sequtils.Sequence(sequence)
self.assertEqual(obj.aa, res)
return
def test_complement(self, sequence, res):
obj = sequtils.Sequence(sequence)
self.assertEqual(obj.complement, res)
return
def test_edit(self, sequence, other, res):
obj = sequtils.Sequence(sequence)
self.assertEqual(obj.edit(other), res)
return
def test_hamming(self, sequence, other, res):
obj = sequtils.Sequence(sequence)
self.assertEqual(obj.hamming(other), res)
return
def test_wrap(self, sequence, bases, res):
obj = sequtils.Sequence(sequence)
self.assertEqual(obj.wrap(bases=bases), res)
return
def test_zipsize(self, sequence, res):
obj = sequtils.Sequence(sequence)
self.assertEqual(obj.zipsize, res)
return
def test_aa_weight(self, sequence, res):
obj = sequtils.Sequence(sequence)
self.assertEqual(round(obj.aa_weight, 2), res)
return
def test_gc_shift(self, sequence, res):
obj = sequtils.Sequence(sequence)
self.assertEqual(obj.gc_shift, res)
return
