Python _get_include_dir Beispiele

Beispiel #1

Datei: bio_nextgen.py Projekt: ccp0101/cloudbiolinux

def _install_samtools_libs(env):
    repository = "svn co --non-interactive " \
                 "https://samtools.svn.sourceforge.net/svnroot/samtools/trunk/samtools"
    def _samtools_lib_install(env):
        lib_dir = _get_lib_dir(env)
        include_dir = os.path.join(env.system_install, "include", "bam")
        env.safe_run("make")
        env.safe_sudo("mv -f libbam* %s" % lib_dir)
        env.safe_sudo("mkdir -p %s" % include_dir)
        env.safe_sudo("mv -f *.h %s" % include_dir)
    check_dir = os.path.join(_get_include_dir(env), "bam")
    if not env.safe_exists(check_dir):
        _get_install(repository, env, _samtools_lib_install)

Beispiel #2

def _install_samtools_libs(env):
    repository = "svn co --non-interactive " \
                 "https://samtools.svn.sourceforge.net/svnroot/samtools/trunk/samtools"
    def _samtools_lib_install(env):
        lib_dir = _get_lib_dir(env)
        include_dir = os.path.join(env.system_install, "include", "bam")
        env.safe_run("make")
        env.safe_sudo("mv -f libbam* %s" % lib_dir)
        env.safe_sudo("mkdir -p %s" % include_dir)
        env.safe_sudo("mv -f *.h %s" % include_dir)
    check_dir = os.path.join(_get_include_dir(env), "bam")
    if not env.safe_exists(check_dir):
        _get_install(repository, env, _samtools_lib_install)