class GaussianProcess_(ProbabilisticModel):
"""GaussianProcess Classifier
"""
def __init__(self, *args, **kwargs):
self.model = GaussianProcessClassifier(*args, **kwargs)
self.name = "gpc"
def train(self, dataset, *args, **kwargs):
return self.model.fit(*(dataset.format_sklearn() + args), **kwargs)
def predict(self, feature, *args, **kwargs):
return self.model.predict(feature, *args, **kwargs)
def score(self, testing_dataset, *args, **kwargs):
return self.model.score(*(testing_dataset.format_sklearn() + args),
**kwargs)
def predict_proba(self, feature, *args, **kwargs):
return self.model.predict_proba(feature, *args, **kwargs)
def feature_importances_(self):
LOGGER.warn("GPC model does not support feature_importance")
return None
def get_params(self):
return self.model.get_params()
class GaussianProcess(ClassicalModel):
def __init__(self,
input_size,
output_size,
labels,
class_weights=None,
**kwargs):
super().__init__(input_size, output_size, labels, class_weights)
self.model = GaussianProcessClassifier(**kwargs)
self.name = "Gaussian Process Classifier: \n" + str(
self.model.get_params())
def GPRTraining(XEstimate, XValidate, Parameters, class_labels):
kernel = RBF(length_scale=1.0, length_scale_bounds=(1e-05, 100000.0))
# clf = GaussianProcessClassifier(kernel=kernel, n_restarts_optimizer=1)
clf = GaussianProcessClassifier(kernel=RBF(length_scale=1.0),
optimizer=None,
multi_class='one_vs_one',
n_jobs=1)
clf.fit(XEstimate, class_labels)
Yvalidate = clf.predict(XValidate)
EstParameters = clf.get_params()
return {"Yvalidate": Yvalidate, "EstParameters": EstParameters, "clf": clf}
y_pred = model.predict(X_test)
errorTst = mean_squared_error(y_test, y_pred)
r2Tst = model.score(X_test, y_test)
now = datetime.now()
current_time = now.strftime("%H:%M:%S")
print(current_time, ' ', exp_num, data_file, ' ', runOpt,
' test accuracy:', r2Tst)
#collection
error = [
errorTrn, errorTst, r2Trn, r2Tst, 'none', funcEvltime,
'empty'
]
data_results_coll.update({
str(data_file.split('.')[0]) + "_" + str(exp_num) + "_" + runOpt:
error
})
#collect all SGDs
#end for all solve
#end for each runs
data_results_coll.update({'model_config': model.get_params()})
np.save(
os.getcwd() + os.sep + 'outputs' + os.sep +
data_file.split('.')[0] + '_Ep_' + str(EPOCHS) + '_B_All_' +
runOpt, data_results_coll)
#end for each dataum
#%% save np.load
print('All experiments end. for')
print(data_file_set)
#a = np.load('outputs'+os.sep+'mlp_friedman_Ep_500_B1Sig_l2.npy.npy').item()
class GaussianProcess(Classifier):
r"""Implementation of gaussian process classifier.
Date:
2020
Author:
Luka Pečnik
License:
MIT
Reference:
Rasmussen, Carl Edward, and Hannes Nickisch. "Gaussian processes for machine learning (GPML) toolbox." The Journal of Machine Learning Research 11 (2010): 3011-3015.
Documentation:
https://scikit-learn.org/stable/modules/generated/sklearn.gaussian_process.GaussianProcessClassifier.html
See Also:
* :class:`niaaml.classifiers.Classifier`
"""
Name = 'Gaussian Process Classifier'
def __init__(self, **kwargs):
r"""Initialize GaussianProcess instance.
"""
warnings.filterwarnings(action='ignore',
category=ChangedBehaviorWarning)
warnings.filterwarnings(action='ignore', category=ConvergenceWarning)
warnings.filterwarnings(action='ignore',
category=DataConversionWarning)
warnings.filterwarnings(action='ignore',
category=DataDimensionalityWarning)
warnings.filterwarnings(action='ignore', category=EfficiencyWarning)
warnings.filterwarnings(action='ignore', category=FitFailedWarning)
warnings.filterwarnings(action='ignore', category=NonBLASDotWarning)
warnings.filterwarnings(action='ignore',
category=UndefinedMetricWarning)
self._params = dict(
max_iter_predict=ParameterDefinition(MinMax(50, 200), np.uint),
warm_start=ParameterDefinition([True, False]),
multi_class=ParameterDefinition(['one_vs_rest', 'one_vs_one']))
self.__gaussian_process = GPC()
def set_parameters(self, **kwargs):
r"""Set the parameters/arguments of the algorithm.
"""
self.__gaussian_process.set_params(**kwargs)
def fit(self, x, y, **kwargs):
r"""Fit GaussianProcess.
Arguments:
x (pandas.core.frame.DataFrame): n samples to classify.
y (pandas.core.series.Series): n classes of the samples in the x array.
Returns:
None
"""
self.__gaussian_process.fit(x, y)
def predict(self, x, **kwargs):
r"""Predict class for each sample (row) in x.
Arguments:
x (pandas.core.frame.DataFrame): n samples to classify.
Returns:
pandas.core.series.Series: n predicted classes.
"""
return self.__gaussian_process.predict(x)
def to_string(self):
r"""User friendly representation of the object.
Returns:
str: User friendly representation of the object.
"""
return Classifier.to_string(self).format(
name=self.Name,
args=self._parameters_to_string(
self.__gaussian_process.get_params()))
