def interpretXMLvalue(self, c) :
name = c.getAttribute('Name')
if name == 'Num' :
self.num = int(smds.strFromTxtNodes(c.childNodes))
return True
if name == 'Hits' :
self.hits = int(smds.strFromTxtNodes(c.childNodes))
return True
if name == 'Misses' :
self.misses = int(smds.strFromTxtNodes(c.childNodes))
return True
if name == 'TimeToHitDist' :
import re
d = smds.strFromTxtNodes(c.childNodes)
d = re.sub("\r", "\n", d)
d = re.sub("[ \t]", '', d)
d = re.sub("\n{2,}", "\n", d)
if d == '' : data = []
else : data = d.split("\n")
if len(data) and data[0] == '' : data = data[1:]
if len(data) and data[-1] == '' : data = data[:-1]
self.hitTimeDist_t = []
self.hitTimeDist_count = []
if len(data) :
for (t, count) in [ p.split(",") for p in data ] :
self.hitTimeDist_t.append(float(t))
self.hitTimeDist_count.append(int(count))
return True
return False # value not found
def interpretXMLvalue(self, c) :
name = c.getAttribute('Name')
if name == 'Length' :
self.length = float(smds.strFromTxtNodes(c.childNodes))
return True
if name == 'Hits' :
self.hits = int(smds.strFromTxtNodes(c.childNodes))
return True
return False # value not found
def interpretXMLvalue(self, c) :
name = c.getAttribute('Name')
if name == 'chargeRadius' :
self.chargeRadius = float(smds.strFromTxtNodes(c.childNodes))
return True
if name == 'charge' :
self.charge = float(smds.strFromTxtNodes(c.childNodes))
return True
return cAHL_elef.interpretXMLvalue(self, c)
def interpretXMLvalue(self, c) :
name = c.getAttribute('Name')
if name == 'stepsPerTape' :
self.stepsPerTape = int(smds.strFromTxtNodes(c.childNodes))
return True
if name == 'tapeSelect' :
self.tapeSelect = int(smds.strFromTxtNodes(c.childNodes))
return True
return False
def interpretXMLvalue(self, c) :
if c.getAttribute('Name') == 'vesicleCounts' :
d = smds.strFromTxtNodes(c.childNodes)
self.vesicleCounts = [ int(x) for x in d.split(', ') ]
return True
if c.getAttribute('Name') == 'freeCounts' :
d = smds.strFromTxtNodes(c.childNodes)
self.freeCounts = [ int(x) for x in d.split(', ') ]
return True
return False
def interpretXMLvalue(self, c) :
name = c.getAttribute('Name')
if name == 'flow' :
self.flow = float(smds.strFromTxtNodes(c.childNodes))
return True
if name == 'flowLength' :
self.flowLength = float(smds.strFromTxtNodes(c.childNodes))
return True
if name == 'drainLength' :
self.drainLength = float(smds.strFromTxtNodes(c.childNodes))
return True
return False # value not found
def interpretXMLvalue(self, c) :
name = c.getAttribute('Name')
if name == 'PotProfile' :
self.potExtent = smds.Task.PotProfile(smds.strFromTxtNodes(c.childNodes).strip())
return True
if name == 'potA' :
self.potA = float(smds.strFromTxtNodes(c.childNodes))
return True
if name == 'potB' :
self.potB = float(smds.strFromTxtNodes(c.childNodes))
return True
return False
def interpretXMLvalue(self, c) :
name = c.getAttribute('Name')
if name == 'conductance' :
self.conductance = float(smds.strFromTxtNodes(c.childNodes))
return True
if name == 'ionicSelectivity' :
self.ionicSelectivity = float(smds.strFromTxtNodes(c.childNodes))
return True
if name == 'Nw' :
self.Nw = float(smds.strFromTxtNodes(c.childNodes))
return True
return False
def interpretXMLvalue(self, c) :
name = c.getAttribute('Name')
if name == 'Avg_I' :
self.avg_I = float(smds.strFromTxtNodes(c.childNodes))
return True
if name == 'Length' :
self.length = float(smds.strFromTxtNodes(c.childNodes))
return True
if name == 'Counts' :
d = smds.strFromTxtNodes(c.childNodes)
self.counts = [ int(x) for x in d.split(', ') ]
return True
return False # value not found
def fromXML(n):
"""SEDH.fromXML(n) --> sedh
Returns a new smds.Analysis.SEDH created from the xml.dom node n."""
if n == None or n.tagName != "SEDH":
return None
r = SEDH(float(n.getAttribute("binWidth")), float(n.getAttribute("threshold")))
d = smds.strFromTxtNodes(n.childNodes)
d = re.sub("\r", "\n", d)
d = re.sub("[ \t]", "", d)
d = re.sub("\n{2,}", "\n", d)
if d == "":
data = []
else:
data = d.split("\n")
if len(data) and data[0] == "":
data = data[1:]
if len(data) and data[-1] == "":
data = data[:-1]
if len(data):
for (t, x) in [p.split(",") for p in data]:
i = int(float(t) / r.binWidth + 0.5)
if i >= len(r.data):
r.data += [0] * (i - len(r.data) + 1)
r.data[i] = int(x)
return r
def fromXML(n, r=None):
"""ACF.fromXML(n) --> acf
Returns a new smds.Analysis.ACF created from the xml.dom node n."""
if n == None or (n.tagName != "ACF" and r == None):
return None
from numpy import asarray
if r == None:
r = ACF()
d = smds.strFromTxtNodes(n.childNodes)
d = re.sub("\r", "\n", d)
d = re.sub("[ \t]", "", d)
d = re.sub("\n{2,}", "\n", d)
if d == "":
data = []
else:
data = d.split("\n")
if len(data) and data[0] == "":
data = data[1:]
if len(data) and data[-1] == "":
data = data[:-1]
if len(data):
for (t, G) in [p.split(",") for p in data]:
r.t.append(float(t))
r.G.append(float(G))
r.t = asarray(r.t)
r.G = asarray(r.G)
return r
def interpretXMLvalue(self, c) :
name = c.getAttribute('Name')
if name == 'Hit Tape' :
import re
d = smds.strFromTxtNodes(c.childNodes)
d = re.sub("\r", "\n", d) # replace linefeed with newline
d = re.sub("[ \t]", '', d) # remove all tabs
d = re.sub("\n{2,}", "\n", d) # replace all repeating newlines with one
if d == '' : data = []
else : data = d.split("\n")
if len(data) and data[0] == '' : data = data[1:]
if len(data) and data[-1] == '' : data = data[:-1]
self.hitTape_t = []
self.hitTape_x = []
self.hitTape_y = []
self.hitTape_z = []
if len(data) :
for (t, x, y, z) in [ p.split(",") for p in data ] :
self.hitTape_t.append(float(t))
self.hitTape_x.append(float(x))
self.hitTape_y.append(float(y))
self.hitTape_z.append(float(z))
return True
if name == 'Miss Tape' :
import re
d = smds.strFromTxtNodes(c.childNodes)
d = re.sub("\r", "\n", d) # replace linefeed with newline
d = re.sub("[ \t]", '', d) # remove all tabs
d = re.sub("\n{2,}", "\n", d) # replace all repeating newlines with one
if d == '' : data = []
else : data = d.split("\n")
if len(data) and data[0] == '' : data = data[1:]
if len(data) and data[-1] == '' : data = data[:-1]
self.missTape_t = []
self.missTape_x = []
self.missTape_y = []
self.missTape_z = []
if len(data) :
for (t, x, y, z) in [ p.split(",") for p in data ] :
self.missTape_t.append(float(t))
self.missTape_x.append(float(x))
self.missTape_y.append(float(y))
self.missTape_z.append(float(z))
return True
return False # value not found
def interpretXMLvalue(self, c) :
name = c.getAttribute('Name')
if name == 'video_framerate' :
self.video_framerate = float(smds.strFromTxtNodes(c.childNodes))
return True
if name == 'video_Nx' :
self.video_Nx = int(smds.strFromTxtNodes(c.childNodes))
return True
if name == 'video_Ny' :
self.video_Ny = int(smds.strFromTxtNodes(c.childNodes))
return True
if name == 'video_sizeX' :
self.video_sizeX = int(smds.strFromTxtNodes(c.childNodes))
return True
if name == 'video_sizeY' :
self.video_sizeY = int(smds.strFromTxtNodes(c.childNodes))
return True
return False # value not found
def fromXML(n) :
"""Returns a new smds.Task.RTR created from the xml.dom node n."""
if (n == None or n.tagName != 'RTR') : return None
r = RTR()
d = re.findall("\d+", smds.strFromTxtNodes(n.childNodes))
r.data = numpy.zeros(len(d), numpy.int16)
for i in range(len(d)) :
r.data[i] = int(d[i])
return r
def fromXML(n):
"""IPCH.fromXML(n) --> ipch
Returns a new smds.Analysis.PCH created from the xml.dom node n."""
r = IPCH(float(n.getAttribute("threshold")), float(n.getAttribute("binWidth")))
d = smds.strFromTxtNodes(n.childNodes)
d = re.sub("\r", "\n", d)
d = re.sub("[ \t]", "", d)
d = re.sub("\n{2,}", "\n", d)
if d == "":
data = []
else:
data = d.split("\n")
if len(data) and data[0] == "":
data = data[1:]
if len(data) and data[-1] == "":
data = data[:-1]
if len(data):
for (t, x) in [p.split(",") for p in data]:
i = int(t)
if i >= len(r.data):
r.data += [0] * (i - len(r.data) + 1)
r.data[i] = int(x)
return r
def interpretXMLvalue(self, c) :
name = c.getAttribute('Name')
if name == 'timeToMiss' :
self.timeToMiss = float(smds.strFromTxtNodes(c.childNodes))
return True
if name == 'initHeight' :
self.initHeight = float(smds.strFromTxtNodes(c.childNodes))
return True
if name == 'D' :
self.D = float(smds.strFromTxtNodes(c.childNodes))
return True
if name == 'capHeight' :
self.capHeight = float(smds.strFromTxtNodes(c.childNodes))
return True
if name == 'capWidth' :
self.capWidth = float(smds.strFromTxtNodes(c.childNodes))
return True
if name == 'channelRadius' :
self.channelRadius = float(smds.strFromTxtNodes(c.childNodes))
return True
if name == 'hitPoint' :
self.hitPoint = float(smds.strFromTxtNodes(c.childNodes))
return True
return False
def interpretXMLvalue(self, c) :
if c.getAttribute('Name') == 'video' :
d = smds.strFromTxtNodes(c.childNodes, True)
self.video = loads(str(d))
return True
def interpretXMLvalue(self, c) :
if c.getAttribute('Name') == 'Bleached' :
d = smds.strFromTxtNodes(c.childNodes)
self.counts = [ int(x) for x in d.split(', ') ]
return True
return False
def interpretXMLvalue(self, c) :
name = c.getAttribute('Name')
if name == 'timeToMiss' :
self.timeToMiss = float(smds.strFromTxtNodes(c.childNodes))
return True
if name == 'D' :
self.D = float(smds.strFromTxtNodes(c.childNodes))
return True
if name == 'mobility' :
self.mobility = float(smds.strFromTxtNodes(c.childNodes))
return True
if name == 'capHeight' :
self.capHeight = float(smds.strFromTxtNodes(c.childNodes))
return True
if name == 'capWidth' :
self.capWidth = float(smds.strFromTxtNodes(c.childNodes))
return True
if name == 'channelRadius' :
self.channelRadius = float(smds.strFromTxtNodes(c.childNodes))
return True
if name == 'hitPoint' :
self.hitPoint = float(smds.strFromTxtNodes(c.childNodes))
return True
if name == 'vestibuleRadius' :
self.vestibuleRadius = float(smds.strFromTxtNodes(c.childNodes))
return True
if name == 'vestibuleHeight' :
self.vestibuleHeight = float(smds.strFromTxtNodes(c.childNodes))
return True
if name == 'vestibulePos' :
self.vestibulePos = float(smds.strFromTxtNodes(c.childNodes))
return True
if name == 'initHeight' :
self.initHeight = float(smds.strFromTxtNodes(c.childNodes))
return True
if name == 'offset' :
self.offset = float(smds.strFromTxtNodes(c.childNodes))
return True
if name == 'potExtent' :
self.potExtent = float(smds.strFromTxtNodes(c.childNodes))
return True
if name == 'potA' :
self.potA = float(smds.strFromTxtNodes(c.childNodes))
return True
if name == 'potB' :
self.potB = float(smds.strFromTxtNodes(c.childNodes))
return True
if name == 'potC' :
self.potC = float(smds.strFromTxtNodes(c.childNodes))
return True
return False
def interpretXMLvalue(self, c) :
name = c.getAttribute('Name')
if name == 'particleRadius' :
self.particleRadius = float(smds.strFromTxtNodes(c.childNodes))
return True
return False