def printjob(self, job):
# skip dynamic jobs that will be "executed" only in dryrun mode
if self.dag.dynamic(job):
return
def format_files(job, io, ruleio, dynamicio):
for f in io:
f_ = ruleio[f]
if f in dynamicio:
yield "{} (dynamic)".format(f.format_dynamic())
else:
yield f
priority = self.dag.priority(job)
logger.job_info(jobid=self.dag.jobid(job),
msg=job.message,
name=job.rule.name,
local=self.workflow.is_local(job.rule),
input=list(format_files(job, job.input, job.ruleio,
job.dynamic_input)),
output=list(format_files(job, job.output, job.ruleio,
job.dynamic_output)),
log=list(job.log),
benchmark=job.benchmark,
wildcards=job.wildcards_dict,
reason=str(self.dag.reason(job)),
resources=job.resources_dict,
priority="highest"
if priority == Job.HIGHEST_PRIORITY else priority,
threads=job.threads)
if job.dynamic_output:
logger.info("Subsequent jobs will be added dynamically "
"depending on the output of this rule")
def log_info(self, skip_dynamic=False, indent=False, printshellcmd=True):
# skip dynamic jobs that will be "executed" only in dryrun mode
if skip_dynamic and self.dag.dynamic(self):
return
priority = self.priority
logger.job_info(
jobid=self.dag.jobid(self),
msg=self.message,
name=self.rule.name,
local=self.dag.workflow.is_local(self.rule),
input=list(format_files(self, self.input, self.dynamic_input)),
output=list(format_files(self, self.output, self.dynamic_output)),
log=list(self.log),
benchmark=self.benchmark,
wildcards=self.wildcards_dict,
reason=str(self.dag.reason(self)),
resources=self.resources,
priority="highest"
if priority == Job.HIGHEST_PRIORITY else priority,
threads=self.threads,
indent=indent,
is_checkpoint=self.rule.is_checkpoint,
printshellcmd=printshellcmd,
)
logger.shellcmd(self.shellcmd, indent=indent)
if self.dynamic_output:
logger.info(
"Subsequent jobs will be added dynamically "
"depending on the output of this job",
indent=True,
)
def printjob(self, job):
# skip dynamic jobs that will be "executed" only in dryrun mode
if self.dag.dynamic(job):
return
def format_files(job, io, dynamicio):
for f in io:
if f in dynamicio:
yield "{} (dynamic)".format(f.format_dynamic())
else:
yield f
priority = self.dag.priority(job)
logger.job_info(
jobid=self.dag.jobid(job),
msg=job.message,
name=job.rule.name,
local=self.workflow.is_local(job.rule),
input=list(format_files(job, job.input, job.dynamic_input)),
output=list(format_files(job, job.output, job.dynamic_output)),
log=list(job.log),
benchmark=job.benchmark,
wildcards=job.wildcards_dict,
reason=str(self.dag.reason(job)),
resources=job.resources,
priority="highest"
if priority == Job.HIGHEST_PRIORITY else priority,
threads=job.threads)
if job.dynamic_output:
logger.info("Subsequent jobs will be added dynamically "
"depending on the output of this rule")
