Beispiel #1
0
def test_get_search_fields(registry):
    request = FakeRequest((('key', 'value'),))
    request.registry = registry
    doc_types = [['Experiment']]
    for doc_type in doc_types:
        fields, highlights = get_search_fields(request, doc_type)
        assert isinstance(highlights, dict) is True
        assert isinstance(fields, list) is True
Beispiel #2
0
 def _construct_query(self):
     '''Helper method for preprocessing view'''
     search_fields, _ = get_search_fields(self._request, self._doc_types)
     query = get_filtered_query(self._search_term, search_fields, [],
                                self._principals, self._doc_types)
     if self._search_term == '*':
         del query['query']['query_string']
     else:
         query['query']['query_string']['fields'].extend(
             ['_all', '*.uuid', '*.md5sum', '*.submitted_file_name'])
     used_filters = self._set_query_aggs(query)
     return query, used_filters
Beispiel #3
0
 def _construct_query(self, result_filters, matrix_x_y):
     '''Helper method for preprocessing view'''
     search_fields, _ = get_search_fields(self._request, self._doc_types)
     query = get_filtered_query(
         self._search_term,
         search_fields,
         [],
         self._principals,
         self._doc_types
     )
     if self._search_term == '*':
         del query['query']['query_string']
     else:
         query['query']['query_string']['fields'].extend(
             ['_all', '*.uuid', '*.md5sum', '*.submitted_file_name']
         )
     used_filters = self._set_query_aggs(query, result_filters, matrix_x_y)
     return query, used_filters
Beispiel #4
0
    def preprocess_view(self, views=None, search_result_actions=None):  # pylint: disable=too-many-statements, too-many-branches, too-many-locals
        '''
        Main function to construct query and build view results json
        * Only publicly accessible function
        '''
        types = self._types
        search_base = normalize_query(self._request)
        result = {
            '@context': self._request.route_path('jsonld_context'),
            '@id': '/search/' + search_base,
            '@type': ['Search'],
            'title': 'Search',
            'filters': [],
        }
        es_index = RESOURCES_INDEX
        search_audit = self._request.has_permission('search_audit')
        from_, size = get_pagination(self._request)
        search_term = prepare_search_term(self._request)
        if (hasattr(self._context, 'type_info')
                and hasattr(self._context.type_info, 'name')
                and self._context.type_info.name):
            doc_types = [self._context.type_info.name]
        else:
            doc_types = self._request.params.getall('type')
            if '*' in doc_types:
                doc_types = ['Item']

        # Normalize to item_type
        try:
            doc_types = sorted({types[name].name for name in doc_types})
        except KeyError:
            # Check for invalid types
            bad_types = [t for t in doc_types if t not in types]
            msg = "Invalid type: {}".format(', '.join(bad_types))
            raise HTTPBadRequest(explanation=msg)
        searchterm_specs = self._request.params.getall('searchTerm')
        searchterm_only = urlencode([("searchTerm", searchterm)
                                     for searchterm in searchterm_specs])
        if searchterm_only:
            clear_qs = searchterm_only
        else:
            clear_qs = urlencode([("type", typ) for typ in doc_types])
        search_route = self._request.route_path('search', slash='/')
        clear_route = '?' + clear_qs if clear_qs else ''
        result['clear_filters'] = search_route + clear_route
        if not doc_types:
            if self._request.params.get('mode') == 'picker':
                doc_types = ['Item']
            else:
                doc_types = self._default_doc_types
        else:
            for item_type in doc_types:
                t_thing = types[item_type]
                q_thing = urlencode([
                    (k.encode('utf-8'), v.encode('utf-8'))
                    for k, v in self._request.params.items()
                    if not (k == 'type'
                            and types['Item' if v == '*' else v] is t_thing)
                ])
                result['filters'].append({
                    'field':
                    'type',
                    'term':
                    t_thing.name,
                    'remove':
                    '{}?{}'.format(self._request.path, q_thing)
                })
            if views:
                result['views'] = views
        search_fields, _ = get_search_fields(self._request, doc_types)
        query = get_filtered_query(
            search_term,
            search_fields,
            sorted(list_result_fields(self._request, doc_types)),
            self._principals,
            doc_types,
        )
        schemas = [types[doc_type].schema for doc_type in doc_types]
        columns = list_visible_columns_for_schemas(self._request, schemas)
        if columns:
            result['columns'] = columns
        if search_term == '*':
            del query['query']['query_string']
        else:
            query['query']['query_string']['fields'].extend(
                ['_all', '*.uuid', '*.md5sum', '*.submitted_file_name'])
        set_sort_order(self._request, search_term, types, doc_types, query,
                       result)
        used_filters = set_filters(self._request, query, result)
        facets = [
            ('type', {
                'title': 'Data Type'
            }),
        ]
        if len(doc_types) == 1 and 'facets' in types[doc_types[0]].schema:
            facets.extend(types[doc_types[0]].schema['facets'].items())
        for audit_facet in self._audit_facets:
            if (search_audit and 'group.submitter' in self._principals
                    or 'INTERNAL_ACTION' not in audit_facet[0]):
                facets.append(audit_facet)
        query['aggs'] = set_facets(facets, used_filters, self._principals,
                                   doc_types)
        query = sort_query(query)
        do_scan = size is None or size > 1000
        if not self._request.params.get('type') or 'Item' in doc_types:
            es_index = RESOURCES_INDEX
        else:
            es_index = [
                types[type_name].item_type for type_name in doc_types
                if hasattr(types[type_name], 'item_type')
            ]
        if do_scan:
            es_results = self._elastic_search.search(
                body=query, index=es_index, search_type='query_then_fetch')
        else:
            es_results = self._elastic_search.search(body=query,
                                                     index=es_index,
                                                     from_=from_,
                                                     size=size,
                                                     request_cache=True)
        total = es_results['hits']['total']
        result['total'] = total
        schemas = (types[item_type].schema for item_type in doc_types)
        result['facets'] = self._format_facets(es_results, facets,
                                               used_filters, schemas, total,
                                               self._principals)
        if search_result_actions:
            result.update(
                search_result_actions(self._request, doc_types, es_results))
        if size is not None and size < result['total']:
            params = [(k, v) for k, v in self._request.params.items()
                      if k != 'limit']
            params.append(('limit', 'all'))
            result['all'] = '%s?%s' % (self._request.resource_path(
                self._context), urlencode(params))
        if not result['total']:
            self._request.response.status_code = 404
            result['notification'] = 'No results found'
            result['@graph'] = []
            return result if not self._return_generator else []
        result['notification'] = 'Success'
        if not do_scan:
            graph = format_results(self._request, es_results['hits']['hits'],
                                   result)
            if self._return_generator:
                return graph
            result['@graph'] = list(graph)
            return result
        del query['aggs']
        if size is None:
            hits = scan(self._elastic_search,
                        query=query,
                        index=es_index,
                        preserve_order=False)
        else:
            hits = scan(self._elastic_search,
                        query=query,
                        index=es_index,
                        from_=from_,
                        size=size,
                        preserve_order=False)
        graph = format_results(self._request, hits, result)
        if self._request.__parent__ is not None or self._return_generator:
            if self._return_generator:
                return graph
            result['@graph'] = list(graph)
            return result
        app_iter = iter_long_json('@graph', graph, result)
        self._request.response.content_type = 'application/json'
        if str is bytes:  # Python 2 vs 3 wsgi differences
            self._request.response.app_iter = app_iter  # Python 2
        else:
            self._request.response.app_iter = (item.encode('utf-8')
                                               for item in app_iter)
        return self._request.response
Beispiel #5
0
 def preprocess_view(self):
     '''
     Main function to construct query and build view results json
     * Only publicly accessible function
     '''
     self._result['@id'] = '/news/' + self._search_base
     self._result['@type'] = ['News']
     self._result['notification'] = ''
     doc_types = ['Page']
     search_fields, _ = get_search_fields(self._request, doc_types)
     query = get_filtered_query(
         '*',
         search_fields,
         sorted(list_result_fields(self._request, doc_types)),
         self._principals,
         doc_types
     )
     del query['query']['query_string']
     sort = OrderedDict()
     result_sort = OrderedDict()
     sort['embedded.date_created'] = result_sort['date_created'] = {
         'order': 'desc',
         'unmapped_type': 'keyword',
     }
     query['sort'] = result_sort
     self._result['sort'] = result_sort
     used_filters = set_filters(
         self._request,
         query,
         self._result,
         [('type', 'Page'), ('news', 'true'), ('status', 'released')]
     )
     facets = []
     if len(doc_types) == 1 and 'facets' in self._types[doc_types[0]].schema:
         facets.extend(self._types[doc_types[0]].schema['facets'].items())
     query['aggs'] = set_facets(facets, used_filters, self._principals, doc_types)
     es_results = self._elastic_search.search(
         body=query,
         index=self._es_index,
         doc_type=self._es_index,
         from_=0,
         size=25)
     total = es_results['hits']['total']
     if not total:
         self._request.response.status_code = 404
         self._result['notification'] = 'No results found'
         self._result['@graph'] = []
         return self._result
     self._result['notification'] = 'Success'
     self._result['total'] = total
     graph = format_results(
         self._request,
         es_results['hits']['hits'],
         self._result
     )
     self._result['@graph'] = list(graph)
     schemas = [
         self._types[doc_type].schema
         for doc_type in doc_types
     ]
     self._result['facets'] = self._format_facets(
         es_results,
         facets,
         used_filters,
         schemas,
         total,
         self._principals
     )
     return self._result
Beispiel #6
0
    def preprocess_view(self, views=None, search_result_actions=None):  # pylint: disable=too-many-statements, too-many-branches, too-many-locals
        '''
        Main function to construct query and build view results json
        * Only publicly accessible function
        '''
        types = self._types
        search_base = normalize_query(self._request)
        result = {
            '@context': self._request.route_path('jsonld_context'),
            '@id': '/search/' + search_base,
            '@type': ['Search'],
            'title': 'Search',
            'filters': [],
        }
        es_index = RESOURCES_INDEX
        search_audit = self._request.has_permission('search_audit')
        from_, size = get_pagination(self._request)
        search_term = prepare_search_term(self._request)
        if (
                hasattr(self._context, 'type_info') and
                hasattr(self._context.type_info, 'name') and
                self._context.type_info.name
            ):
            doc_types = [self._context.type_info.name]
        else:
            doc_types = self._request.params.getall('type')
            if '*' in doc_types:
                doc_types = ['Item']

        # Normalize to item_type
        try:
            doc_types = sorted({types[name].name for name in doc_types})
        except KeyError:
            # Check for invalid types
            bad_types = [t for t in doc_types if t not in types]
            msg = "Invalid type: {}".format(', '.join(bad_types))
            raise HTTPBadRequest(explanation=msg)
        searchterm_specs = self._request.params.getall('searchTerm')
        searchterm_only = urlencode(
            [
                ("searchTerm", searchterm)
                for searchterm in searchterm_specs
            ]
        )
        if searchterm_only:
            clear_qs = searchterm_only
        else:
            clear_qs = urlencode([("type", typ) for typ in doc_types])
        search_route = self._request.route_path('search', slash='/')
        clear_route = '?' + clear_qs if clear_qs else ''
        result['clear_filters'] = search_route + clear_route
        if not doc_types:
            if self._request.params.get('mode') == 'picker':
                doc_types = ['Item']
            else:
                doc_types = self._default_doc_types
        else:
            for item_type in doc_types:
                t_thing = types[item_type]
                q_thing = urlencode(
                    [
                        (k.encode('utf-8'), v.encode('utf-8'))
                        for k, v in self._request.params.items()
                        if not (k == 'type' and types['Item' if v == '*' else v] is t_thing)
                    ]
                )
                result['filters'].append({
                    'field': 'type',
                    'term': t_thing.name,
                    'remove': '{}?{}'.format(self._request.path, q_thing)
                })
            if views:
                result['views'] = views
        search_fields, _ = get_search_fields(self._request, doc_types)
        query = get_filtered_query(
            search_term,
            search_fields,
            sorted(list_result_fields(self._request, doc_types)),
            self._principals,
            doc_types,
        )
        schemas = [types[doc_type].schema for doc_type in doc_types]
        columns = list_visible_columns_for_schemas(self._request, schemas)
        if columns:
            result['columns'] = columns
        if search_term == '*':
            del query['query']['query_string']
        else:
            query['query']['query_string']['fields'].extend(
                ['_all', '*.uuid', '*.md5sum', '*.submitted_file_name']
            )
        set_sort_order(self._request, search_term, types, doc_types, query, result)
        used_filters = set_filters(self._request, query, result)
        facets = [
            ('type', {'title': 'Data Type'}),
        ]
        if len(doc_types) == 1 and 'facets' in types[doc_types[0]].schema:
            facets.extend(types[doc_types[0]].schema['facets'].items())
        for audit_facet in self._audit_facets:
            if (
                    search_audit and
                    'group.submitter' in self._principals or
                    'INTERNAL_ACTION' not in audit_facet[0]
                ):
                facets.append(audit_facet)
        query['aggs'] = set_facets(facets, used_filters, self._principals, doc_types)
        query = sort_query(query)
        do_scan = size is None or size > 1000
        if not self._request.params.get('type') or 'Item' in doc_types:
            es_index = RESOURCES_INDEX
        else:
            es_index = [
                types[type_name].item_type
                for type_name in doc_types
                if hasattr(types[type_name], 'item_type')
            ]
        if do_scan:
            es_results = self._elastic_search.search(
                body=query,
                index=es_index,
                search_type='query_then_fetch'
            )
        else:
            es_results = self._elastic_search.search(
                body=query,
                index=es_index,
                from_=from_, size=size,
                request_cache=True
            )
        total = es_results['hits']['total']
        result['total'] = total
        schemas = (types[item_type].schema for item_type in doc_types)
        result['facets'] = self._format_facets(
            es_results,
            facets,
            used_filters,
            schemas,
            total,
            self._principals
        )
        if search_result_actions:
            result.update(
                search_result_actions(
                    self._request, doc_types, es_results
                )
            )
        if size is not None and size < result['total']:
            params = [(k, v) for k, v in self._request.params.items() if k != 'limit']
            params.append(('limit', 'all'))
            result['all'] = '%s?%s' % (
                self._request.resource_path(self._context),
                urlencode(params)
            )
        if not result['total']:
            self._request.response.status_code = 404
            result['notification'] = 'No results found'
            result['@graph'] = []
            return result if not self._return_generator else []
        result['notification'] = 'Success'
        if not do_scan:
            graph = format_results(
                self._request,
                es_results['hits']['hits'],
                result
            )
            if self._return_generator:
                return graph
            result['@graph'] = list(graph)
            return result
        del query['aggs']
        if size is None:
            hits = scan(
                self._elastic_search,
                query=query,
                index=es_index,
                preserve_order=False
            )
        else:
            hits = scan(
                self._elastic_search,
                query=query,
                index=es_index,
                from_=from_,
                size=size,
                preserve_order=False
            )
        graph = format_results(self._request, hits, result)
        if self._request.__parent__ is not None or self._return_generator:
            if self._return_generator:
                return graph
            result['@graph'] = list(graph)
            return result
        app_iter = iter_long_json('@graph', graph, result)
        self._request.response.content_type = 'application/json'
        if str is bytes:  # Python 2 vs 3 wsgi differences
            self._request.response.app_iter = app_iter  # Python 2
        else:
            self._request.response.app_iter = (
                item.encode('utf-8') for item in app_iter
            )
        return self._request.response