if exc_type == OSError and exc_value.errno == errno.ENOEXEC: # Exec format error
support.error("It looks like you are using SPAdes binaries for another platform.\n" +
support.get_spades_binaries_info_message(), dipspades=True)
else:
log.exception(exc_value)
support.error("exception caught: %s" % exc_type, log)
except BaseException: # since python 2.5 system-exiting exceptions (e.g. KeyboardInterrupt) are derived from BaseException
exc_type, exc_value, _ = sys.exc_info()
if exc_type == SystemExit:
sys.exit(exc_value)
else:
log.exception(exc_value)
support.error("exception caught: %s" % exc_type, log, dipspades=True)
if __name__ == '__main__':
self_dir_path = os.path.abspath(os.path.dirname(os.path.realpath(__file__)))
spades_init_candidate1 = os.path.join(self_dir_path, "../../spades_init.py")
spades_init_candidate2 = os.path.join(self_dir_path, "../../../bin/spades_init.py")
if os.path.isfile(spades_init_candidate1):
sys.path.append(os.path.dirname(spades_init_candidate1))
elif os.path.isfile(spades_init_candidate2):
sys.path.append(os.path.dirname(spades_init_candidate2))
else:
sys.stderr.write("Cannot find spades_init.py! Aborting..\n")
sys.stderr.flush()
sys.exit(1)
import spades_init
spades_init.init()
main(sys.argv, "", spades_init.spades_home, spades_init.bin_home)
# All Rights Reserved
# See file LICENSE for details.
############################################################################
import os
import shutil
from site import addsitedir
from distutils import dir_util
import sys
import getopt
import logging
import platform
import errno
import spades_init
spades_init.init()
spades_home = spades_init.spades_home
bin_home = spades_init.bin_home
python_modules_home = spades_init.python_modules_home
ext_python_modules_home = spades_init.ext_python_modules_home
spades_version = spades_init.spades_version
import support
support.check_python_version()
from process_cfg import merge_configs, empty_config, load_config_from_file
import hammer_logic
import spades_logic
import options_storage
addsitedir(ext_python_modules_home)
if sys.version.startswith('2.'):