def test_ndtuples():
t = rand_int_tuple()
k = ndtuples(*t)
uk = np.unique(k.ravel())
uk.sort()
assert_array_equal(uk, np.arange(max(t)))
def _create_xcorr_inds(nchannels):
"""Create a ``MultiIndex`` for `nchannels` channels.
Parameters
----------
nchannels : int
Returns
-------
xc_inds : MultiIndex
"""
from span.tdt.spikeglobals import Indexer
channel_i, channel_j = 'channel i', 'channel j'
channel_names = channel_i, channel_j
lr = DataFrame(ndtuples(nchannels, nchannels), columns=channel_names)
left, right = lr[channel_i], lr[channel_j]
srt_idx = Indexer.sort('channel').reset_index(drop=True)
lshank, rshank = srt_idx.shank[left], srt_idx.shank[right]
lshank.name, rshank.name = 'shank i', 'shank j'
return MultiIndex.from_arrays((left, right, lshank, rshank))
def distance_map(nshanks, electrodes_per_shank, within_shank, between_shank,
metric='wminkowski', p=2.0):
"""Create an electrode distance map.
Parameters
----------
nshanks, electrodes_per_shank : int
within_shank, between_shank : float
metric : str or callable, optional
The distance measure to use to compute the distance between electrodes.
p : number, optional
See :py:mod:`scipy.spatial.distance` for more details.
Raises
------
AssertionError
* If `nshanks` < 1 or `nshanks` is not an integer
* If neither of those same conditions holds for `electrodes_per_shank`
* If `metric` is not a string or callable or
* If `p` is not an instance of ``numbers.Real`` and ``<= 0``
Returns
-------
dists : DataFrame
DataFrame of pairwise distances between electrodes.
"""
assert nshanks >= 1, 'must have at least one shank'
assert isinstance(nshanks, numbers.Integral), 'nshanks must be an integer'
assert electrodes_per_shank >= 1, \
'must have at least one electrode per shank'
assert isinstance(electrodes_per_shank, numbers.Integral), \
'"electrodes_per_shank" must be an integer'
assert isinstance(metric, basestring) or callable(metric), \
'"metric" must be a string or callable'
assert isinstance(p, numbers.Real) and p > 0, \
'"p" must be a positive real number'
locs = ndtuples(electrodes_per_shank, nshanks)
if locs.ndim == 1:
locs = locs[:, np.newaxis]
w = np.asanyarray((between_shank, within_shank), dtype=float)
return squareform(pdist(locs, metric=metric, p=p, w=w))
def test_ndtuples_3(self):
m, n, l = randint(2, 3), randint(2, 4), randint(3, 4)
x = ndtuples(m, n, l)
self.assertTupleEqual((m * n * l, 3), x.shape)
def test_ndtuples_2(self):
m, n = randint(2, 5), randint(2, 4)
x = ndtuples(m, n)
self.assertTupleEqual((m * n, 2), x.shape)
def test_ndtuples_1(self):
n = randint(1, 3)
x = ndtuples(n)
assert_array_equal(x, np.arange(n))